Hb_004242_120

Information

Type -
Description -
Location Contig4242: 104086-106582
Sequence    

Annotation

kegg
ID rcu:RCOM_0987060
description Organic cation transporter, putative
nr
ID XP_002530918.1
description Organic cation transporter, putative [Ricinus communis]
swissprot
ID Q9LHQ6
description Organic cation/carnitine transporter 4 OS=Arabidopsis thaliana GN=OCT4 PE=2 SV=1
trembl
ID B9SY49
description Organic cation transporter, putative OS=Ricinus communis GN=RCOM_0987060 PE=4 SV=1
Gene Ontology
ID GO:0009535
description organic cation carnitine transporter 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_120 0.0 - - Organic cation transporter, putative [Ricinus communis]
2 Hb_002030_050 0.12731489 - - classical arabinogalactan protein 7 precursor [Jatropha curcas]
3 Hb_000173_110 0.1310149302 - - putative RNA-directed DNA polymerase (Reverse transcriptase) [Malus domestica]
4 Hb_011472_050 0.131816024 - - -
5 Hb_003687_160 0.1341428558 - - Ran GTPase binding protein, putative [Ricinus communis]
6 Hb_000574_320 0.1474439673 - - hypothetical protein CICLE_v10024937mg [Citrus clementina]
7 Hb_022693_080 0.1519610215 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
8 Hb_010565_030 0.1542381638 - - hypothetical protein VITISV_006810 [Vitis vinifera]
9 Hb_000574_040 0.1564255944 - - PREDICTED: triphosphate tunel metalloenzyme 3-like isoform X1 [Jatropha curcas]
10 Hb_006277_080 0.1587017002 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
11 Hb_006940_020 0.1591509132 - - polyprotein [Oryza australiensis]
12 Hb_004109_130 0.1612343142 - - PREDICTED: translation initiation factor IF-2, chloroplastic [Jatropha curcas]
13 Hb_140389_010 0.1625795011 - - Ran GTPase binding protein, putative [Ricinus communis]
14 Hb_000237_170 0.1643072827 transcription factor TF Family: HB PREDICTED: BEL1-like homeodomain protein 6 [Jatropha curcas]
15 Hb_000352_060 0.1643953989 - - RNA-directed DNA polymerase [Arachis hypogaea]
16 Hb_000123_340 0.1645296376 - - PREDICTED: uncharacterized protein LOC105789586 [Gossypium raimondii]
17 Hb_010402_040 0.1649251525 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
18 Hb_002799_060 0.1653063581 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like [Jatropha curcas]
19 Hb_000072_240 0.1657266548 transcription factor TF Family: C2C2-CO-like zinc finger protein, putative [Ricinus communis]
20 Hb_009434_060 0.1660315248 - - T4.15 [Malus x robusta]

Gene co-expression network

sample Hb_004242_120 Hb_004242_120 Hb_002030_050 Hb_002030_050 Hb_004242_120--Hb_002030_050 Hb_000173_110 Hb_000173_110 Hb_004242_120--Hb_000173_110 Hb_011472_050 Hb_011472_050 Hb_004242_120--Hb_011472_050 Hb_003687_160 Hb_003687_160 Hb_004242_120--Hb_003687_160 Hb_000574_320 Hb_000574_320 Hb_004242_120--Hb_000574_320 Hb_022693_080 Hb_022693_080 Hb_004242_120--Hb_022693_080 Hb_002030_050--Hb_000574_320 Hb_002030_050--Hb_011472_050 Hb_000237_170 Hb_000237_170 Hb_002030_050--Hb_000237_170 Hb_002030_050--Hb_003687_160 Hb_002013_030 Hb_002013_030 Hb_002030_050--Hb_002013_030 Hb_000123_340 Hb_000123_340 Hb_000173_110--Hb_000123_340 Hb_001366_260 Hb_001366_260 Hb_000173_110--Hb_001366_260 Hb_000820_100 Hb_000820_100 Hb_000173_110--Hb_000820_100 Hb_010565_030 Hb_010565_030 Hb_000173_110--Hb_010565_030 Hb_116784_020 Hb_116784_020 Hb_000173_110--Hb_116784_020 Hb_000173_110--Hb_011472_050 Hb_011472_050--Hb_010565_030 Hb_005542_010 Hb_005542_010 Hb_011472_050--Hb_005542_010 Hb_067472_010 Hb_067472_010 Hb_011472_050--Hb_067472_010 Hb_011472_050--Hb_001366_260 Hb_009434_060 Hb_009434_060 Hb_011472_050--Hb_009434_060 Hb_003687_160--Hb_000123_340 Hb_000360_010 Hb_000360_010 Hb_003687_160--Hb_000360_010 Hb_004109_130 Hb_004109_130 Hb_003687_160--Hb_004109_130 Hb_011649_030 Hb_011649_030 Hb_003687_160--Hb_011649_030 Hb_127552_050 Hb_127552_050 Hb_003687_160--Hb_127552_050 Hb_140389_010 Hb_140389_010 Hb_000574_320--Hb_140389_010 Hb_000069_500 Hb_000069_500 Hb_000574_320--Hb_000069_500 Hb_000574_320--Hb_011472_050 Hb_006277_080 Hb_006277_080 Hb_000574_320--Hb_006277_080 Hb_000556_070 Hb_000556_070 Hb_000574_320--Hb_000556_070 Hb_004117_320 Hb_004117_320 Hb_022693_080--Hb_004117_320 Hb_005867_050 Hb_005867_050 Hb_022693_080--Hb_005867_050 Hb_000270_640 Hb_000270_640 Hb_022693_080--Hb_000270_640 Hb_004979_080 Hb_004979_080 Hb_022693_080--Hb_004979_080 Hb_004291_050 Hb_004291_050 Hb_022693_080--Hb_004291_050 Hb_019863_050 Hb_019863_050 Hb_022693_080--Hb_019863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0319516 0.705 0.59898 0.24446 0.0498412 0.0608254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0292743 0.0460631 0 0.165355 2.26978

CAGE analysis