Hb_004242_200

Information

Type transcription factor
Description TF Family: C2H2
Location Contig4242: 169005-171543
Sequence    

Annotation

kegg
ID pop:POPTR_0011s13480g
description POPTRDRAFT_569056; zinc finger family protein
nr
ID XP_006370600.1
description hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GX07
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s44130g PE=4 SV=1
Gene Ontology
ID GO:0003950
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41973: 168854-171519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_200 0.0 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s44130g [Populus trichocarpa]
2 Hb_010381_080 0.056719199 - - cytochrome P450, putative [Ricinus communis]
3 Hb_001300_240 0.0584271494 - - shikimate dehydrogenase, putative [Ricinus communis]
4 Hb_114893_010 0.0739628795 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
5 Hb_006147_020 0.0913468273 - - conserved hypothetical protein [Ricinus communis]
6 Hb_043935_010 0.097346718 - - Receptor protein kinase-like protein [Medicago truncatula]
7 Hb_004146_030 0.0995722214 - - UDP-glucosyltransferase, putative [Ricinus communis]
8 Hb_003171_040 0.1007519249 - - multidrug resistance pump, putative [Ricinus communis]
9 Hb_000199_090 0.1045333337 - - Tetrapyrrole-binding family protein [Populus trichocarpa]
10 Hb_000026_060 0.1071213416 - - beta-1,3-glucanase [Manihot esculenta]
11 Hb_002122_070 0.1091354841 - - unnamed protein product [Vitis vinifera]
12 Hb_039435_020 0.1125959755 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
13 Hb_012539_080 0.1147640132 - - Polyprotein, putative [Solanum demissum]
14 Hb_004459_050 0.1148533519 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004392_030 0.1153095856 - - oxidoreductase family protein [Populus trichocarpa]
16 Hb_080791_010 0.1176224408 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
17 Hb_002111_010 0.1180263357 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2 [Jatropha curcas]
18 Hb_001579_050 0.119211329 - - alcohol dehydrogenase, putative [Ricinus communis]
19 Hb_000483_440 0.1203494275 - - conserved hypothetical protein [Ricinus communis]
20 Hb_015817_010 0.1210669765 - - PREDICTED: putative receptor protein kinase ZmPK1 [Jatropha curcas]

Gene co-expression network

sample Hb_004242_200 Hb_004242_200 Hb_010381_080 Hb_010381_080 Hb_004242_200--Hb_010381_080 Hb_001300_240 Hb_001300_240 Hb_004242_200--Hb_001300_240 Hb_114893_010 Hb_114893_010 Hb_004242_200--Hb_114893_010 Hb_006147_020 Hb_006147_020 Hb_004242_200--Hb_006147_020 Hb_043935_010 Hb_043935_010 Hb_004242_200--Hb_043935_010 Hb_004146_030 Hb_004146_030 Hb_004242_200--Hb_004146_030 Hb_010381_080--Hb_043935_010 Hb_010381_080--Hb_114893_010 Hb_010381_080--Hb_006147_020 Hb_010381_080--Hb_001300_240 Hb_004459_050 Hb_004459_050 Hb_010381_080--Hb_004459_050 Hb_001300_240--Hb_114893_010 Hb_039435_020 Hb_039435_020 Hb_001300_240--Hb_039435_020 Hb_002122_070 Hb_002122_070 Hb_001300_240--Hb_002122_070 Hb_001300_240--Hb_006147_020 Hb_114893_010--Hb_002122_070 Hb_114893_010--Hb_039435_020 Hb_000199_090 Hb_000199_090 Hb_114893_010--Hb_000199_090 Hb_004392_030 Hb_004392_030 Hb_006147_020--Hb_004392_030 Hb_006147_020--Hb_043935_010 Hb_012539_080 Hb_012539_080 Hb_006147_020--Hb_012539_080 Hb_015817_010 Hb_015817_010 Hb_006147_020--Hb_015817_010 Hb_080791_010 Hb_080791_010 Hb_006147_020--Hb_080791_010 Hb_043935_010--Hb_015817_010 Hb_043935_010--Hb_004392_030 Hb_043935_010--Hb_012539_080 Hb_002659_050 Hb_002659_050 Hb_043935_010--Hb_002659_050 Hb_007426_070 Hb_007426_070 Hb_004146_030--Hb_007426_070 Hb_000026_060 Hb_000026_060 Hb_004146_030--Hb_000026_060 Hb_000017_210 Hb_000017_210 Hb_004146_030--Hb_000017_210 Hb_000483_440 Hb_000483_440 Hb_004146_030--Hb_000483_440 Hb_000858_050 Hb_000858_050 Hb_004146_030--Hb_000858_050 Hb_001579_050 Hb_001579_050 Hb_004146_030--Hb_001579_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.034298 0.584314 7.39804 3.77657 0 0.0102502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0240632 0.0378664 0.0358456 3.25588 24.1253

CAGE analysis