Hb_004242_210

Information

Type -
Description -
Location Contig4242: 182666-184584
Sequence    

Annotation

kegg
ID tcc:TCM_031126
description hypothetical protein
nr
ID XP_012071213.1
description PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L3F0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00792 PE=4 SV=1
Gene Ontology
ID GO:0010087
description PREDICTED: uncharacterized protein LOC105633248

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41975: 182497-184730
cDNA
(Sanger)
(ID:Location)		 045_K18.ab1: 182497-184686

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004242_210 0.0 - - PREDICTED: uncharacterized protein LOC105633248 [Jatropha curcas]
2 Hb_000640_110 0.2005266513 - - -
3 Hb_005597_010 0.222110183 - - -
4 Hb_003643_030 0.2473098082 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Populus euphratica]
5 Hb_002217_490 0.2515534241 - - -
6 Hb_002311_460 0.258555766 - - ubiquitin-protein ligase, putative [Ricinus communis]
7 Hb_000737_020 0.266103908 - - -
8 Hb_154600_010 0.2749254571 - - hypothetical protein JCGZ_17786 [Jatropha curcas]
9 Hb_003551_040 0.2800498155 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
10 Hb_154381_010 0.2801194162 - - -
11 Hb_001754_160 0.2853160078 - - PREDICTED: flowering-promoting factor 1-like protein 3 [Jatropha curcas]
12 Hb_003266_070 0.2870756724 - - -
13 Hb_001832_220 0.2880456606 - - -
14 Hb_005965_020 0.295902868 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000080_080 0.3075110293 - - -
16 Hb_130067_010 0.3146898977 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_000416_120 0.316170258 - - Putative LRR receptor-like serine/threonine-protein kinase, partial [Glycine soja]
18 Hb_000078_160 0.3223479452 - - PREDICTED: protein LURP-one-related 12-like [Jatropha curcas]
19 Hb_002391_090 0.3278804621 - - PREDICTED: IST1-like protein [Jatropha curcas]
20 Hb_001195_210 0.3339091049 - - -

Gene co-expression network

sample Hb_004242_210 Hb_004242_210 Hb_000640_110 Hb_000640_110 Hb_004242_210--Hb_000640_110 Hb_005597_010 Hb_005597_010 Hb_004242_210--Hb_005597_010 Hb_003643_030 Hb_003643_030 Hb_004242_210--Hb_003643_030 Hb_002217_490 Hb_002217_490 Hb_004242_210--Hb_002217_490 Hb_002311_460 Hb_002311_460 Hb_004242_210--Hb_002311_460 Hb_000737_020 Hb_000737_020 Hb_004242_210--Hb_000737_020 Hb_000640_110--Hb_005597_010 Hb_143800_010 Hb_143800_010 Hb_000640_110--Hb_143800_010 Hb_030885_020 Hb_030885_020 Hb_000640_110--Hb_030885_020 Hb_000415_070 Hb_000415_070 Hb_000640_110--Hb_000415_070 Hb_130067_010 Hb_130067_010 Hb_000640_110--Hb_130067_010 Hb_005597_010--Hb_030885_020 Hb_003455_010 Hb_003455_010 Hb_005597_010--Hb_003455_010 Hb_004770_060 Hb_004770_060 Hb_005597_010--Hb_004770_060 Hb_000416_120 Hb_000416_120 Hb_005597_010--Hb_000416_120 Hb_001754_160 Hb_001754_160 Hb_003643_030--Hb_001754_160 Hb_003266_070 Hb_003266_070 Hb_003643_030--Hb_003266_070 Hb_001195_210 Hb_001195_210 Hb_003643_030--Hb_001195_210 Hb_000116_200 Hb_000116_200 Hb_003643_030--Hb_000116_200 Hb_001143_150 Hb_001143_150 Hb_003643_030--Hb_001143_150 Hb_160246_010 Hb_160246_010 Hb_003643_030--Hb_160246_010 Hb_000080_080 Hb_000080_080 Hb_002217_490--Hb_000080_080 Hb_005672_030 Hb_005672_030 Hb_002217_490--Hb_005672_030 Hb_123926_010 Hb_123926_010 Hb_002217_490--Hb_123926_010 Hb_034280_010 Hb_034280_010 Hb_002217_490--Hb_034280_010 Hb_001369_140 Hb_001369_140 Hb_002217_490--Hb_001369_140 Hb_000676_130 Hb_000676_130 Hb_002217_490--Hb_000676_130 Hb_003551_040 Hb_003551_040 Hb_002311_460--Hb_003551_040 Hb_002311_460--Hb_000737_020 Hb_154381_010 Hb_154381_010 Hb_002311_460--Hb_154381_010 Hb_001832_220 Hb_001832_220 Hb_002311_460--Hb_001832_220 Hb_000078_160 Hb_000078_160 Hb_002311_460--Hb_000078_160 Hb_004885_020 Hb_004885_020 Hb_002311_460--Hb_004885_020 Hb_000737_020--Hb_001832_220 Hb_000743_070 Hb_000743_070 Hb_000737_020--Hb_000743_070 Hb_000127_050 Hb_000127_050 Hb_000737_020--Hb_000127_050 Hb_160814_010 Hb_160814_010 Hb_000737_020--Hb_160814_010 Hb_004785_150 Hb_004785_150 Hb_000737_020--Hb_004785_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.126073 0.299609 0 0.0960063
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0983379 0 0.203628 0

CAGE analysis