Hb_004243_010

Information

Type -
Description -
Location Contig4243: 14018-14828
Sequence    

Annotation

kegg
ID rcu:RCOM_0351480
description transcription factor, putative
nr
ID KDP45080.1
description hypothetical protein JCGZ_01580 [Jatropha curcas]
swissprot
ID O23659
description B3 domain-containing protein At2g33720 OS=Arabidopsis thaliana GN=At2g33720 PE=2 SV=1
trembl
ID A0A067LK53
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41976: 12105-13425
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004243_010 0.0 - - hypothetical protein JCGZ_01580 [Jatropha curcas]
2 Hb_005054_070 0.1600024374 - - unnamed protein product [Vitis vinifera]
3 Hb_004241_040 0.1874390532 - - -
4 Hb_000529_100 0.1885751988 - - hypothetical protein POPTR_0009s05980g [Populus trichocarpa]
5 Hb_012305_040 0.1891833183 - - PREDICTED: DNA-directed RNA polymerases II, IV and V subunit 9A-like [Jatropha curcas]
6 Hb_144898_010 0.1914270084 - - PREDICTED: 60S ribosomal protein L7-2-like [Jatropha curcas]
7 Hb_000176_120 0.2022928677 - - seryl-tRNA synthetase, putative [Ricinus communis]
8 Hb_136765_010 0.2095448595 - - PREDICTED: phosphatidylinositol glycan anchor biosynthesis class U protein-like isoform X2 [Jatropha curcas]
9 Hb_032496_030 0.2143409805 - - PREDICTED: WEB family protein At3g02930, chloroplastic [Jatropha curcas]
10 Hb_000261_360 0.2177299513 - - unknown [Lotus japonicus]
11 Hb_000122_140 0.2178727983 - - -
12 Hb_000107_140 0.2183069586 - - -
13 Hb_000001_040 0.2228222428 - - unnamed protein product [Coffea canephora]
14 Hb_056199_010 0.2260552777 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
15 Hb_004662_010 0.2282658923 - - Nascent polypeptide-associated complex subunit beta [Medicago truncatula]
16 Hb_000025_100 0.228594648 - - -
17 Hb_073367_010 0.2298820583 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
18 Hb_004117_180 0.2306716566 - - -
19 Hb_071923_010 0.2316533413 - - -
20 Hb_011174_010 0.2348170531 - - hypothetical protein JCGZ_10122 [Jatropha curcas]

Gene co-expression network

sample Hb_004243_010 Hb_004243_010 Hb_005054_070 Hb_005054_070 Hb_004243_010--Hb_005054_070 Hb_004241_040 Hb_004241_040 Hb_004243_010--Hb_004241_040 Hb_000529_100 Hb_000529_100 Hb_004243_010--Hb_000529_100 Hb_012305_040 Hb_012305_040 Hb_004243_010--Hb_012305_040 Hb_144898_010 Hb_144898_010 Hb_004243_010--Hb_144898_010 Hb_000176_120 Hb_000176_120 Hb_004243_010--Hb_000176_120 Hb_005054_070--Hb_000176_120 Hb_136731_010 Hb_136731_010 Hb_005054_070--Hb_136731_010 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_000001_040 Hb_000001_040 Hb_005054_070--Hb_000001_040 Hb_005054_070--Hb_004241_040 Hb_005054_070--Hb_144898_010 Hb_004241_040--Hb_032496_030 Hb_073367_010 Hb_073367_010 Hb_004241_040--Hb_073367_010 Hb_000622_100 Hb_000622_100 Hb_004241_040--Hb_000622_100 Hb_025236_040 Hb_025236_040 Hb_004241_040--Hb_025236_040 Hb_004662_010 Hb_004662_010 Hb_004241_040--Hb_004662_010 Hb_019715_020 Hb_019715_020 Hb_000529_100--Hb_019715_020 Hb_003041_060 Hb_003041_060 Hb_000529_100--Hb_003041_060 Hb_004712_180 Hb_004712_180 Hb_000529_100--Hb_004712_180 Hb_000529_100--Hb_005054_070 Hb_000048_090 Hb_000048_090 Hb_000529_100--Hb_000048_090 Hb_012305_040--Hb_004662_010 Hb_012305_040--Hb_000176_120 Hb_000107_140 Hb_000107_140 Hb_012305_040--Hb_000107_140 Hb_073339_010 Hb_073339_010 Hb_012305_040--Hb_073339_010 Hb_012305_040--Hb_144898_010 Hb_012305_040--Hb_004241_040 Hb_144898_010--Hb_000107_140 Hb_181320_010 Hb_181320_010 Hb_144898_010--Hb_181320_010 Hb_005305_060 Hb_005305_060 Hb_144898_010--Hb_005305_060 Hb_001722_020 Hb_001722_020 Hb_144898_010--Hb_001722_020 Hb_012807_080 Hb_012807_080 Hb_144898_010--Hb_012807_080 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_000176_120--Hb_136731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0642007 0 0.024224 0.0584925 0.0645008 0.189922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0739905 0.0581729 0 0.0236055 0

CAGE analysis