Hb_004254_120

Information

Type -
Description -
Location Contig4254: 109803-122291
Sequence    

Annotation

kegg
ID rcu:RCOM_1158880
description hypothetical protein
nr
ID XP_002532158.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T1N9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1158880 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42021: 109921-122502 , PASA_asmbl_42022: 109827-122218
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004254_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_032202_190 0.0524579354 - - PREDICTED: probable xyloglucan endotransglucosylase/hydrolase protein 21 [Gossypium raimondii]
3 Hb_005618_170 0.055191669 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
4 Hb_005305_080 0.0566816746 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
5 Hb_000206_210 0.0583111938 - - PREDICTED: G patch domain-containing protein 11 [Jatropha curcas]
6 Hb_000876_070 0.0583921574 - - protein phosphatase 2a, regulatory subunit, putative [Ricinus communis]
7 Hb_000928_210 0.0590531842 - - PREDICTED: uncharacterized protein LOC105632512 isoform X1 [Jatropha curcas]
8 Hb_025240_040 0.0591494103 - - hypothetical protein JCGZ_02438 [Jatropha curcas]
9 Hb_004218_110 0.0596449915 - - hypothetical protein PRUPE_ppa006329mg [Prunus persica]
10 Hb_009838_080 0.0613778157 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
11 Hb_005289_030 0.0658669754 - - PREDICTED: receptor homology region, transmembrane domain- and RING domain-containing protein 2 [Jatropha curcas]
12 Hb_024185_020 0.0663770109 - - -
13 Hb_005663_060 0.071112618 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
14 Hb_000777_040 0.0720383508 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
15 Hb_001369_690 0.0721586821 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
16 Hb_002016_110 0.0730702762 - - transducin family protein [Populus trichocarpa]
17 Hb_002183_090 0.0731723234 - - PREDICTED: protein EMSY-LIKE 1 [Jatropha curcas]
18 Hb_003125_010 0.0733290617 - - PREDICTED: uncharacterized protein LOC105640205 [Jatropha curcas]
19 Hb_010504_020 0.0735256075 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
20 Hb_012053_070 0.0735670269 - - PREDICTED: uncharacterized protein LOC105637344 [Jatropha curcas]

Gene co-expression network

sample Hb_004254_120 Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_004254_120--Hb_032202_190 Hb_005618_170 Hb_005618_170 Hb_004254_120--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_004254_120--Hb_005305_080 Hb_000206_210 Hb_000206_210 Hb_004254_120--Hb_000206_210 Hb_000876_070 Hb_000876_070 Hb_004254_120--Hb_000876_070 Hb_000928_210 Hb_000928_210 Hb_004254_120--Hb_000928_210 Hb_005663_060 Hb_005663_060 Hb_032202_190--Hb_005663_060 Hb_032202_190--Hb_000876_070 Hb_032202_190--Hb_005618_170 Hb_032202_190--Hb_005305_080 Hb_007691_030 Hb_007691_030 Hb_032202_190--Hb_007691_030 Hb_005618_170--Hb_005305_080 Hb_005618_170--Hb_000876_070 Hb_007416_320 Hb_007416_320 Hb_005618_170--Hb_007416_320 Hb_000085_050 Hb_000085_050 Hb_005618_170--Hb_000085_050 Hb_010504_020 Hb_010504_020 Hb_005305_080--Hb_010504_020 Hb_000510_130 Hb_000510_130 Hb_005305_080--Hb_000510_130 Hb_005305_080--Hb_000876_070 Hb_024185_020 Hb_024185_020 Hb_000206_210--Hb_024185_020 Hb_000777_040 Hb_000777_040 Hb_000206_210--Hb_000777_040 Hb_009838_080 Hb_009838_080 Hb_000206_210--Hb_009838_080 Hb_000206_210--Hb_000928_210 Hb_000173_290 Hb_000173_290 Hb_000206_210--Hb_000173_290 Hb_002739_100 Hb_002739_100 Hb_000876_070--Hb_002739_100 Hb_005779_060 Hb_005779_060 Hb_000876_070--Hb_005779_060 Hb_002046_180 Hb_002046_180 Hb_000876_070--Hb_002046_180 Hb_000876_070--Hb_007691_030 Hb_000928_210--Hb_000876_070 Hb_000928_210--Hb_002739_100 Hb_004724_080 Hb_004724_080 Hb_000928_210--Hb_004724_080 Hb_000928_210--Hb_002046_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.1069 6.86971 6.09778 8.98685 12.7345 15.298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.9005 19.528 20.7122 10.7736 9.86447

CAGE analysis