Hb_004274_010

Information

Type -
Description -
Location Contig4274: 11746-14523
Sequence    

Annotation

kegg
ID egr:104451199
description uncharacterized LOC104451199
nr
ID XP_010064218.1
description PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A5BXH3
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_023348 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004274_010 0.0 - - PREDICTED: uncharacterized protein LOC104451199 [Eucalyptus grandis]
2 Hb_001452_150 0.018878516 - - PREDICTED: uncharacterized protein LOC104879858 [Vitis vinifera]
3 Hb_003427_040 0.0305130451 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
4 Hb_009826_010 0.0336513874 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_011476_010 0.0825945924 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
6 Hb_000029_220 0.0925787144 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Jatropha curcas]
7 Hb_024248_010 0.097622525 - - PREDICTED: uncharacterized protein LOC105779006 [Gossypium raimondii]
8 Hb_003186_050 0.1116966248 - - -
9 Hb_000914_010 0.1163996955 - - hypothetical protein POPTR_0025s00760g [Populus trichocarpa]
10 Hb_167457_010 0.1185446769 - - hypothetical protein glysoja_045622, partial [Glycine soja]
11 Hb_051410_010 0.1262257916 - - PREDICTED: uncharacterized protein LOC103401813 [Malus domestica]
12 Hb_094484_010 0.1338702217 - - kinase, putative [Ricinus communis]
13 Hb_001401_030 0.1375942385 - - PREDICTED: uncharacterized protein LOC105649622 [Jatropha curcas]
14 Hb_005676_020 0.1455719794 transcription factor TF Family: ERF hypothetical protein RCOM_1314900 [Ricinus communis]
15 Hb_000907_050 0.1509630392 - - -
16 Hb_027969_010 0.155098933 - - hypothetical protein JCGZ_24556 [Jatropha curcas]
17 Hb_010721_040 0.170529933 transcription factor TF Family: M-type unnamed protein product [Vitis vinifera]
18 Hb_062192_050 0.1716753168 - - -
19 Hb_004530_010 0.1799440598 - - PREDICTED: uncharacterized protein LOC104898079 [Beta vulgaris subsp. vulgaris]
20 Hb_010964_030 0.1811709113 - - PREDICTED: uncharacterized protein LOC105647958 [Jatropha curcas]

Gene co-expression network

sample Hb_004274_010 Hb_004274_010 Hb_001452_150 Hb_001452_150 Hb_004274_010--Hb_001452_150 Hb_003427_040 Hb_003427_040 Hb_004274_010--Hb_003427_040 Hb_009826_010 Hb_009826_010 Hb_004274_010--Hb_009826_010 Hb_011476_010 Hb_011476_010 Hb_004274_010--Hb_011476_010 Hb_000029_220 Hb_000029_220 Hb_004274_010--Hb_000029_220 Hb_024248_010 Hb_024248_010 Hb_004274_010--Hb_024248_010 Hb_001452_150--Hb_003427_040 Hb_001452_150--Hb_009826_010 Hb_001452_150--Hb_024248_010 Hb_001452_150--Hb_000029_220 Hb_001452_150--Hb_011476_010 Hb_003427_040--Hb_009826_010 Hb_003427_040--Hb_024248_010 Hb_003427_040--Hb_000029_220 Hb_003427_040--Hb_011476_010 Hb_009826_010--Hb_024248_010 Hb_009826_010--Hb_000029_220 Hb_001401_030 Hb_001401_030 Hb_009826_010--Hb_001401_030 Hb_003186_050 Hb_003186_050 Hb_011476_010--Hb_003186_050 Hb_167457_010 Hb_167457_010 Hb_011476_010--Hb_167457_010 Hb_000914_010 Hb_000914_010 Hb_011476_010--Hb_000914_010 Hb_027969_010 Hb_027969_010 Hb_000029_220--Hb_027969_010 Hb_000029_220--Hb_024248_010 Hb_005676_020 Hb_005676_020 Hb_000029_220--Hb_005676_020 Hb_024248_010--Hb_001401_030 Hb_024248_010--Hb_005676_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0256417 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0221177 0.109369

CAGE analysis