Hb_004282_010

Information

Type -
Description -
Location Contig4282: 26288-28849
Sequence    

Annotation

kegg
ID rcu:RCOM_0639210
description ATP binding protein, putative (EC:2.7.10.1 3.1.3.16)
nr
ID XP_012071498.1
description PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
swissprot
ID C0LGK9
description Probable LRR receptor-like serine/threonine-protein kinase At2g24230 OS=Arabidopsis thaliana GN=At2g24230 PE=2 SV=1
trembl
ID B9T3Y7
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_0639210 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable lrr receptor-like serine threonine-protein kinase at2g24230

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004282_010 0.0 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
2 Hb_000956_070 0.0513578646 - - PREDICTED: probable serine/threonine-protein kinase At1g01540 [Jatropha curcas]
3 Hb_006501_100 0.0602461751 - - malic enzyme, putative [Ricinus communis]
4 Hb_000014_080 0.0738134921 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
5 Hb_008727_040 0.0874526992 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001568_010 0.0899475348 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006277_030 0.0937200472 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002818_170 0.0948998918 - - hypothetical protein POPTR_0014s10650g [Populus trichocarpa]
9 Hb_000127_080 0.1027520548 - - hypothetical protein POPTR_0005s21760g [Populus trichocarpa]
10 Hb_001040_200 0.1035536784 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
11 Hb_005731_070 0.1069617562 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005144_080 0.10869503 - - Serine carboxypeptidase, putative [Ricinus communis]
13 Hb_002025_380 0.1166564474 - - Uncharacterized protein TCM_011176 [Theobroma cacao]
14 Hb_007386_030 0.1179431918 - - PREDICTED: formin-like protein 2 [Jatropha curcas]
15 Hb_007017_100 0.1191562172 - - PREDICTED: uncharacterized protein LOC105649804 isoform X1 [Jatropha curcas]
16 Hb_019026_050 0.1227249582 - - conserved hypothetical protein [Ricinus communis]
17 Hb_023956_010 0.1232005949 - - glutathione s-transferase, putative [Ricinus communis]
18 Hb_006846_030 0.1239242697 - - respiratory burst oxidase A [Manihot esculenta]
19 Hb_003189_010 0.1252784965 - - hypothetical protein EUGRSUZ_G02605 [Eucalyptus grandis]
20 Hb_022250_160 0.1259543563 - - respiratory burst oxidase A [Manihot esculenta]

Gene co-expression network

sample Hb_004282_010 Hb_004282_010 Hb_000956_070 Hb_000956_070 Hb_004282_010--Hb_000956_070 Hb_006501_100 Hb_006501_100 Hb_004282_010--Hb_006501_100 Hb_000014_080 Hb_000014_080 Hb_004282_010--Hb_000014_080 Hb_008727_040 Hb_008727_040 Hb_004282_010--Hb_008727_040 Hb_001568_010 Hb_001568_010 Hb_004282_010--Hb_001568_010 Hb_006277_030 Hb_006277_030 Hb_004282_010--Hb_006277_030 Hb_000956_070--Hb_006501_100 Hb_000956_070--Hb_000014_080 Hb_000956_070--Hb_008727_040 Hb_000127_080 Hb_000127_080 Hb_000956_070--Hb_000127_080 Hb_002818_170 Hb_002818_170 Hb_000956_070--Hb_002818_170 Hb_006501_100--Hb_006277_030 Hb_006501_100--Hb_002818_170 Hb_006501_100--Hb_000014_080 Hb_002025_380 Hb_002025_380 Hb_006501_100--Hb_002025_380 Hb_000014_080--Hb_001568_010 Hb_005731_070 Hb_005731_070 Hb_000014_080--Hb_005731_070 Hb_007386_030 Hb_007386_030 Hb_000014_080--Hb_007386_030 Hb_012787_050 Hb_012787_050 Hb_008727_040--Hb_012787_050 Hb_008727_040--Hb_001568_010 Hb_085315_010 Hb_085315_010 Hb_008727_040--Hb_085315_010 Hb_006846_030 Hb_006846_030 Hb_008727_040--Hb_006846_030 Hb_001568_010--Hb_006846_030 Hb_003847_050 Hb_003847_050 Hb_001568_010--Hb_003847_050 Hb_001568_010--Hb_012787_050 Hb_006277_030--Hb_002818_170 Hb_006277_030--Hb_002025_380 Hb_003189_010 Hb_003189_010 Hb_006277_030--Hb_003189_010 Hb_005144_080 Hb_005144_080 Hb_006277_030--Hb_005144_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.062459 0.931213 2.21435 6.26939 0.0075897 0.0274825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0172052 0 0 5.0689 1.81401

CAGE analysis