Hb_004286_030

Information

Type transcription factor
Description TF Family: AP2
Location Contig4286: 44297-47865
Sequence    

Annotation

kegg
ID tcc:TCM_034652
description Integrase-type DNA-binding superfamily protein
nr
ID XP_012068166.1
description PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
swissprot
ID Q38914
description AP2-like ethylene-responsive transcription factor ANT OS=Arabidopsis thaliana GN=ANT PE=1 SV=2
trembl
ID A0A067LBU8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15986 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ap2-like ethylene-responsive transcription factor ant

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42081: 43856-44223 , PASA_asmbl_42082: 47055-47818
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004286_030 0.0 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
2 Hb_002662_090 0.1358117458 - - PREDICTED: probable inactive receptor kinase At5g67200 [Jatropha curcas]
3 Hb_000051_030 0.1445340063 - - PREDICTED: E3 ubiquitin-protein ligase SINAT2-like [Jatropha curcas]
4 Hb_010578_050 0.156883299 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
5 Hb_001842_060 0.1641320194 desease resistance Gene Name: ABC_trans_N hypothetical protein JCGZ_10908 [Jatropha curcas]
6 Hb_005186_090 0.1675345737 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_000625_060 0.1746887794 - - Protein P21, putative [Ricinus communis]
8 Hb_001584_010 0.1776660614 - - kelch repeat protein, putative [Ricinus communis]
9 Hb_001856_170 0.1777877549 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
10 Hb_000953_040 0.1897099381 - - hypothetical protein OsJ_19135 [Oryza sativa Japonica Group]
11 Hb_001355_070 0.1915709206 - - P-loop containing nucleoside triphosphate hydrolases superfamily protein, putative isoform 2 [Theobroma cacao]
12 Hb_004007_120 0.1961972808 - - PREDICTED: calcium-transporting ATPase 2, plasma membrane-type isoform X1 [Populus euphratica]
13 Hb_001318_110 0.1963253661 - - PREDICTED: uncharacterized protein LOC105642677 [Jatropha curcas]
14 Hb_000130_080 0.1963897072 - - unnamed protein product [Vitis vinifera]
15 Hb_002641_050 0.197545212 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 48 [Jatropha curcas]
16 Hb_003050_050 0.1975959339 - - hypothetical protein JCGZ_04619 [Jatropha curcas]
17 Hb_001369_160 0.1990335096 - - PREDICTED: uncharacterized protein LOC105648628 [Jatropha curcas]
18 Hb_000836_610 0.2002200636 - - stem-specific protein TSJT1-like [Jatropha curcas]
19 Hb_000840_070 0.200460912 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
20 Hb_000120_310 0.2021731477 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004286_030 Hb_004286_030 Hb_002662_090 Hb_002662_090 Hb_004286_030--Hb_002662_090 Hb_000051_030 Hb_000051_030 Hb_004286_030--Hb_000051_030 Hb_010578_050 Hb_010578_050 Hb_004286_030--Hb_010578_050 Hb_001842_060 Hb_001842_060 Hb_004286_030--Hb_001842_060 Hb_005186_090 Hb_005186_090 Hb_004286_030--Hb_005186_090 Hb_000625_060 Hb_000625_060 Hb_004286_030--Hb_000625_060 Hb_001369_160 Hb_001369_160 Hb_002662_090--Hb_001369_160 Hb_002662_090--Hb_001842_060 Hb_002928_180 Hb_002928_180 Hb_002662_090--Hb_002928_180 Hb_010174_190 Hb_010174_190 Hb_002662_090--Hb_010174_190 Hb_003894_100 Hb_003894_100 Hb_002662_090--Hb_003894_100 Hb_000347_020 Hb_000347_020 Hb_000051_030--Hb_000347_020 Hb_029622_020 Hb_029622_020 Hb_000051_030--Hb_029622_020 Hb_068492_010 Hb_068492_010 Hb_000051_030--Hb_068492_010 Hb_000051_030--Hb_002662_090 Hb_001318_110 Hb_001318_110 Hb_000051_030--Hb_001318_110 Hb_010578_050--Hb_005186_090 Hb_002783_320 Hb_002783_320 Hb_010578_050--Hb_002783_320 Hb_010578_050--Hb_000625_060 Hb_000030_260 Hb_000030_260 Hb_010578_050--Hb_000030_260 Hb_000836_390 Hb_000836_390 Hb_010578_050--Hb_000836_390 Hb_000120_070 Hb_000120_070 Hb_010578_050--Hb_000120_070 Hb_002030_170 Hb_002030_170 Hb_001842_060--Hb_002030_170 Hb_002471_140 Hb_002471_140 Hb_001842_060--Hb_002471_140 Hb_000953_040 Hb_000953_040 Hb_001842_060--Hb_000953_040 Hb_004631_080 Hb_004631_080 Hb_001842_060--Hb_004631_080 Hb_000345_340 Hb_000345_340 Hb_001842_060--Hb_000345_340 Hb_005186_090--Hb_000625_060 Hb_005186_090--Hb_000030_260 Hb_000130_080 Hb_000130_080 Hb_005186_090--Hb_000130_080 Hb_005186_090--Hb_001842_060 Hb_004657_040 Hb_004657_040 Hb_000625_060--Hb_004657_040 Hb_001514_210 Hb_001514_210 Hb_000625_060--Hb_001514_210 Hb_000625_060--Hb_000030_260 Hb_162286_030 Hb_162286_030 Hb_000625_060--Hb_162286_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.565236 7.32419 3.98582 3.3878 0.537298 0.59051
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.157562 0.24796 0.412711 7.16275 0.0985888

CAGE analysis