Hb_004291_010

Information

Type -
Description -
Location Contig4291: 51699-56139
Sequence    

Annotation

kegg
ID rcu:RCOM_1545320
description (R)-limonene synthase, putative (EC:4.2.3.20)
nr
ID XP_002515692.1
description (R)-limonene synthase, putative [Ricinus communis]
swissprot
ID B9RPM3
description Probable terpene synthase 9 OS=Ricinus communis GN=TPS9 PE=3 SV=1
trembl
ID B9HE53
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s02810g PE=4 SV=2
Gene Ontology
ID GO:0000287
description probable terpene synthase 9

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42130: 54526-56040
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004291_010 0.0 - - (R)-limonene synthase, putative [Ricinus communis]
2 Hb_017134_010 0.1715944703 - - HEV1.2 [Hevea brasiliensis]
3 Hb_001579_140 0.2004606471 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
4 Hb_004064_020 0.2031394918 - - hypothetical protein M569_06853, partial [Genlisea aurea]
5 Hb_002151_050 0.2083764834 - - cytochrome P450, putative [Ricinus communis]
6 Hb_003913_080 0.2099348765 - - rpl27A [Hemiselmis andersenii]
7 Hb_012239_100 0.2215879403 - - hypothetical protein VITISV_043897 [Vitis vinifera]
8 Hb_013766_010 0.2236087273 - - hypothetical protein JCGZ_00483 [Jatropha curcas]
9 Hb_003095_040 0.2247078677 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]
10 Hb_003052_220 0.2293347735 - - -
11 Hb_008516_040 0.2302952706 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000115_050 0.2303194845 - - -
13 Hb_007218_100 0.2333520845 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_108528_010 0.2394283785 - - unnamed protein product [Coffea canephora]
15 Hb_001369_450 0.2395377754 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
16 Hb_004333_020 0.2407057095 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
17 Hb_000749_240 0.2411632469 - - conserved hypothetical protein [Ricinus communis]
18 Hb_105602_020 0.2418384335 - - PREDICTED: 60S ribosomal protein L19-1-like [Populus euphratica]
19 Hb_003754_080 0.2441320906 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
20 Hb_179520_010 0.2466869619 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]

Gene co-expression network

sample Hb_004291_010 Hb_004291_010 Hb_017134_010 Hb_017134_010 Hb_004291_010--Hb_017134_010 Hb_001579_140 Hb_001579_140 Hb_004291_010--Hb_001579_140 Hb_004064_020 Hb_004064_020 Hb_004291_010--Hb_004064_020 Hb_002151_050 Hb_002151_050 Hb_004291_010--Hb_002151_050 Hb_003913_080 Hb_003913_080 Hb_004291_010--Hb_003913_080 Hb_012239_100 Hb_012239_100 Hb_004291_010--Hb_012239_100 Hb_111039_010 Hb_111039_010 Hb_017134_010--Hb_111039_010 Hb_000749_240 Hb_000749_240 Hb_017134_010--Hb_000749_240 Hb_017134_010--Hb_001579_140 Hb_108528_010 Hb_108528_010 Hb_017134_010--Hb_108528_010 Hb_000115_050 Hb_000115_050 Hb_017134_010--Hb_000115_050 Hb_000792_120 Hb_000792_120 Hb_001579_140--Hb_000792_120 Hb_000613_160 Hb_000613_160 Hb_001579_140--Hb_000613_160 Hb_001579_140--Hb_012239_100 Hb_005000_160 Hb_005000_160 Hb_001579_140--Hb_005000_160 Hb_009838_040 Hb_009838_040 Hb_001579_140--Hb_009838_040 Hb_001579_140--Hb_000749_240 Hb_004064_020--Hb_108528_010 Hb_179520_010 Hb_179520_010 Hb_004064_020--Hb_179520_010 Hb_105602_020 Hb_105602_020 Hb_004064_020--Hb_105602_020 Hb_010174_070 Hb_010174_070 Hb_004064_020--Hb_010174_070 Hb_004064_020--Hb_003913_080 Hb_008516_040 Hb_008516_040 Hb_004064_020--Hb_008516_040 Hb_002151_050--Hb_003913_080 Hb_002151_050--Hb_012239_100 Hb_002138_010 Hb_002138_010 Hb_002151_050--Hb_002138_010 Hb_036790_020 Hb_036790_020 Hb_002151_050--Hb_036790_020 Hb_000184_230 Hb_000184_230 Hb_002151_050--Hb_000184_230 Hb_145084_010 Hb_145084_010 Hb_002151_050--Hb_145084_010 Hb_000161_150 Hb_000161_150 Hb_003913_080--Hb_000161_150 Hb_001776_170 Hb_001776_170 Hb_003913_080--Hb_001776_170 Hb_005671_020 Hb_005671_020 Hb_003913_080--Hb_005671_020 Hb_000010_410 Hb_000010_410 Hb_003913_080--Hb_000010_410 Hb_012239_100--Hb_009838_040 Hb_000215_180 Hb_000215_180 Hb_012239_100--Hb_000215_180 Hb_012239_100--Hb_005000_160 Hb_000432_050 Hb_000432_050 Hb_012239_100--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_012239_100--Hb_001538_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.450747 2.76944 0.264461 0.178606 0.0102033 0.0365791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.1479 13.7395 12.6736 7.25123 0

CAGE analysis