Hb_004291_050

Information

Type -
Description -
Location Contig4291: 125870-151931
Sequence    

Annotation

kegg
ID pop:POPTR_0018s09540g
description POPTRDRAFT_779386; hypothetical protein
nr
ID XP_002324455.2
description hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
swissprot
ID P47735
description Receptor-like protein kinase 5 OS=Arabidopsis thaliana GN=RLK5 PE=1 SV=1
trembl
ID B9ILV1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0018s09540g PE=3 SV=2
Gene Ontology
ID GO:0016020
description receptor-like protein kinase hsl1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004291_050 0.0 - - hypothetical protein POPTR_0018s09540g [Populus trichocarpa]
2 Hb_004979_080 0.0854569129 - - kinase, putative [Ricinus communis]
3 Hb_004979_070 0.0891041584 - - wall-associated receptor kinase galacturonan-binding protein [Medicago truncatula]
4 Hb_000011_440 0.0891086969 - - PREDICTED: GDSL esterase/lipase 1 [Populus euphratica]
5 Hb_007904_110 0.0894038343 - - PREDICTED: photosystem II core complex proteins psbY, chloroplastic-like [Populus euphratica]
6 Hb_000644_010 0.0940865455 - - PREDICTED: putative disease resistance protein RGA1 isoform X2 [Jatropha curcas]
7 Hb_027337_130 0.0964220742 - - PREDICTED: non-functional NADPH-dependent codeinone reductase 2-like [Jatropha curcas]
8 Hb_002226_090 0.0971159985 - - Stachyose synthase precursor, putative [Ricinus communis]
9 Hb_000270_640 0.0992276749 - - hypothetical protein POPTR_0012s07880g [Populus trichocarpa]
10 Hb_096224_050 0.1003333342 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g31250 [Jatropha curcas]
11 Hb_004117_320 0.1034777408 - - PREDICTED: probable serine/threonine-protein kinase WNK5 [Jatropha curcas]
12 Hb_022693_080 0.1124248174 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
13 Hb_002943_020 0.1147547823 - - hypothetical protein POPTR_0075s00240g, partial [Populus trichocarpa]
14 Hb_000027_110 0.1154187876 - - wall-associated kinase, putative [Ricinus communis]
15 Hb_010402_040 0.1163176559 - - hypothetical protein JCGZ_21227 [Jatropha curcas]
16 Hb_001541_280 0.1181158648 - - phosphate transporter [Manihot esculenta]
17 Hb_020367_040 0.1195797727 - - hypothetical protein JCGZ_01061 [Jatropha curcas]
18 Hb_004934_130 0.120095501 - - 12-oxophytodienoate reductase 2 isoform 1 [Theobroma cacao]
19 Hb_119600_030 0.1205655235 - - PREDICTED: uncharacterized protein LOC105635187 [Jatropha curcas]
20 Hb_000092_060 0.124644609 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]

Gene co-expression network

sample Hb_004291_050 Hb_004291_050 Hb_004979_080 Hb_004979_080 Hb_004291_050--Hb_004979_080 Hb_004979_070 Hb_004979_070 Hb_004291_050--Hb_004979_070 Hb_000011_440 Hb_000011_440 Hb_004291_050--Hb_000011_440 Hb_007904_110 Hb_007904_110 Hb_004291_050--Hb_007904_110 Hb_000644_010 Hb_000644_010 Hb_004291_050--Hb_000644_010 Hb_027337_130 Hb_027337_130 Hb_004291_050--Hb_027337_130 Hb_096224_050 Hb_096224_050 Hb_004979_080--Hb_096224_050 Hb_004979_080--Hb_000644_010 Hb_004979_080--Hb_004979_070 Hb_033363_030 Hb_033363_030 Hb_004979_080--Hb_033363_030 Hb_004979_080--Hb_007904_110 Hb_000668_180 Hb_000668_180 Hb_004979_080--Hb_000668_180 Hb_004979_070--Hb_007904_110 Hb_004979_070--Hb_096224_050 Hb_025557_060 Hb_025557_060 Hb_004979_070--Hb_025557_060 Hb_119600_030 Hb_119600_030 Hb_004979_070--Hb_119600_030 Hb_000092_060 Hb_000092_060 Hb_000011_440--Hb_000092_060 Hb_002111_010 Hb_002111_010 Hb_000011_440--Hb_002111_010 Hb_000441_080 Hb_000441_080 Hb_000011_440--Hb_000441_080 Hb_001300_160 Hb_001300_160 Hb_000011_440--Hb_001300_160 Hb_000483_440 Hb_000483_440 Hb_000011_440--Hb_000483_440 Hb_007904_110--Hb_096224_050 Hb_005305_070 Hb_005305_070 Hb_007904_110--Hb_005305_070 Hb_007904_110--Hb_119600_030 Hb_007904_110--Hb_025557_060 Hb_003643_080 Hb_003643_080 Hb_000644_010--Hb_003643_080 Hb_000644_010--Hb_096224_050 Hb_000373_010 Hb_000373_010 Hb_000644_010--Hb_000373_010 Hb_000027_110 Hb_000027_110 Hb_000644_010--Hb_000027_110 Hb_002155_020 Hb_002155_020 Hb_000644_010--Hb_002155_020 Hb_188075_010 Hb_188075_010 Hb_027337_130--Hb_188075_010 Hb_002636_070 Hb_002636_070 Hb_027337_130--Hb_002636_070 Hb_000574_340 Hb_000574_340 Hb_027337_130--Hb_000574_340 Hb_008461_070 Hb_008461_070 Hb_027337_130--Hb_008461_070 Hb_000033_010 Hb_000033_010 Hb_027337_130--Hb_000033_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00605347 0.16006 0.244401 0.191938 0 0.00799047
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.057556 0.847248

CAGE analysis