Hb_004294_020

Information

Type -
Description -
Location Contig4294: 92477-106533
Sequence    

Annotation

kegg
ID pxb:103934789
description uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic-like
nr
ID XP_012075202.1
description PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
swissprot
ID P73627
description Uncharacterized protein sll1770 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=sll1770 PE=3 SV=1
trembl
ID A0A067KGA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09385 PE=4 SV=1
Gene Ontology
ID GO:0009941
description uncharacterized aarf domain-containing protein kinase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42133: 92392-95951 , PASA_asmbl_42134: 106149-106519
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004294_020 0.0 - - PREDICTED: uncharacterized aarF domain-containing protein kinase At1g79600, chloroplastic [Jatropha curcas]
2 Hb_000826_070 0.0932960469 - - conserved hypothetical protein [Ricinus communis]
3 Hb_143629_020 0.0964654417 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
4 Hb_001999_140 0.0969570714 - - PREDICTED: anthranilate synthase alpha subunit 2, chloroplastic isoform X2 [Jatropha curcas]
5 Hb_002809_160 0.0979773599 - - PREDICTED: protein FAM63A [Jatropha curcas]
6 Hb_000109_260 0.1008843549 - - PREDICTED: WAT1-related protein At3g28050-like isoform X1 [Jatropha curcas]
7 Hb_160608_010 0.1026728502 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
8 Hb_000008_410 0.1039379518 rubber biosynthesis Gene Name: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase [Hevea brasiliensis]
9 Hb_000200_110 0.1048133582 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
10 Hb_000976_110 0.1054248926 - - PREDICTED: KRR1 small subunit processome component homolog [Jatropha curcas]
11 Hb_000665_260 0.1056950826 - - PREDICTED: uncharacterized protein LOC105637620 isoform X1 [Jatropha curcas]
12 Hb_000664_120 0.1072607352 - - PREDICTED: SART-1 family protein DOT2 isoform X1 [Jatropha curcas]
13 Hb_000009_030 0.1074628373 - - PREDICTED: splicing factor U2af large subunit B isoform X1 [Jatropha curcas]
14 Hb_003661_010 0.1082651693 - - PREDICTED: zinc transporter 6, chloroplastic [Jatropha curcas]
15 Hb_012022_060 0.108719376 - - PREDICTED: uncharacterized protein LOC105646588 isoform X2 [Jatropha curcas]
16 Hb_003633_090 0.1092717866 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
17 Hb_000428_030 0.1094092302 - - hypothetical protein RCOM_1520720 [Ricinus communis]
18 Hb_000172_340 0.1099217361 - - PREDICTED: uncharacterized protein LOC101261327 [Solanum lycopersicum]
19 Hb_013459_020 0.1111170704 - - PREDICTED: uncharacterized protein LOC105628886 [Jatropha curcas]
20 Hb_002461_020 0.1115481315 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004294_020 Hb_004294_020 Hb_000826_070 Hb_000826_070 Hb_004294_020--Hb_000826_070 Hb_143629_020 Hb_143629_020 Hb_004294_020--Hb_143629_020 Hb_001999_140 Hb_001999_140 Hb_004294_020--Hb_001999_140 Hb_002809_160 Hb_002809_160 Hb_004294_020--Hb_002809_160 Hb_000109_260 Hb_000109_260 Hb_004294_020--Hb_000109_260 Hb_160608_010 Hb_160608_010 Hb_004294_020--Hb_160608_010 Hb_000826_070--Hb_001999_140 Hb_013459_020 Hb_013459_020 Hb_000826_070--Hb_013459_020 Hb_000664_120 Hb_000664_120 Hb_000826_070--Hb_000664_120 Hb_005211_020 Hb_005211_020 Hb_000826_070--Hb_005211_020 Hb_000568_050 Hb_000568_050 Hb_000826_070--Hb_000568_050 Hb_012055_110 Hb_012055_110 Hb_000826_070--Hb_012055_110 Hb_004586_090 Hb_004586_090 Hb_143629_020--Hb_004586_090 Hb_006794_020 Hb_006794_020 Hb_143629_020--Hb_006794_020 Hb_000428_030 Hb_000428_030 Hb_143629_020--Hb_000428_030 Hb_143629_020--Hb_160608_010 Hb_143629_020--Hb_002809_160 Hb_002078_470 Hb_002078_470 Hb_143629_020--Hb_002078_470 Hb_001999_140--Hb_000664_120 Hb_001999_140--Hb_013459_020 Hb_001221_180 Hb_001221_180 Hb_001999_140--Hb_001221_180 Hb_003093_040 Hb_003093_040 Hb_001999_140--Hb_003093_040 Hb_002357_070 Hb_002357_070 Hb_001999_140--Hb_002357_070 Hb_001414_010 Hb_001414_010 Hb_002809_160--Hb_001414_010 Hb_029552_020 Hb_029552_020 Hb_002809_160--Hb_029552_020 Hb_005305_130 Hb_005305_130 Hb_002809_160--Hb_005305_130 Hb_009078_020 Hb_009078_020 Hb_002809_160--Hb_009078_020 Hb_000172_360 Hb_000172_360 Hb_002809_160--Hb_000172_360 Hb_000976_110 Hb_000976_110 Hb_000109_260--Hb_000976_110 Hb_003490_060 Hb_003490_060 Hb_000109_260--Hb_003490_060 Hb_003680_020 Hb_003680_020 Hb_000109_260--Hb_003680_020 Hb_011674_040 Hb_011674_040 Hb_000109_260--Hb_011674_040 Hb_000009_030 Hb_000009_030 Hb_000109_260--Hb_000009_030 Hb_003490_050 Hb_003490_050 Hb_000109_260--Hb_003490_050 Hb_006478_030 Hb_006478_030 Hb_160608_010--Hb_006478_030 Hb_003661_010 Hb_003661_010 Hb_160608_010--Hb_003661_010 Hb_160608_010--Hb_005305_130 Hb_160608_010--Hb_001414_010 Hb_001507_050 Hb_001507_050 Hb_160608_010--Hb_001507_050 Hb_000318_150 Hb_000318_150 Hb_160608_010--Hb_000318_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.4455 16.9725 14.5319 10.6601 9.98358 7.01982
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00927 2.95366 2.16782 16.7508 20.0446

CAGE analysis