Hb_004296_020

Information

Type -
Description -
Location Contig4296: 27268-28446
Sequence    

Annotation

kegg
ID fve:101292678
description ubiquitin fusion degradation protein 1 homolog
nr
ID CDP09078.1
description unnamed protein product [Coffea canephora]
swissprot
ID Q9ES53
description Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1
trembl
ID A0A068UN78
description Coffea canephora DH200=94 genomic scaffold, scaffold_36 OS=Coffea canephora GN=GSCOC_T00028270001 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004296_020 0.0 - - unnamed protein product [Coffea canephora]
2 Hb_033772_050 0.1738282648 transcription factor TF Family: MYB PREDICTED: myb-related protein A-like [Jatropha curcas]
3 Hb_005701_030 0.2151404948 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001364_030 0.2153058876 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
5 Hb_000363_140 0.2199214814 - - hypothetical protein CICLE_v10009052mg [Citrus clementina]
6 Hb_000692_020 0.2255269556 - - PREDICTED: E3 ubiquitin-protein ligase ATL23 [Jatropha curcas]
7 Hb_004129_150 0.2261260868 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-4a-like [Jatropha curcas]
8 Hb_005568_080 0.2318949117 - - conserved hypothetical protein [Ricinus communis]
9 Hb_021888_050 0.2412882652 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
10 Hb_021888_120 0.2455161239 - - PREDICTED: putative CCR4-associated factor 1 homolog 8 [Jatropha curcas]
11 Hb_009486_190 0.2477064914 - - ATP binding protein, putative [Ricinus communis]
12 Hb_023536_010 0.2503871608 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 1 [Jatropha curcas]
13 Hb_000326_060 0.2511844862 - - PREDICTED: uncharacterized protein LOC104214925 [Nicotiana sylvestris]
14 Hb_010897_030 0.2515463523 - - conserved hypothetical protein [Ricinus communis]
15 Hb_176052_010 0.2552922179 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_010050_050 0.2567837563 - - PREDICTED: piezo-type mechanosensitive ion channel homolog isoform X2 [Jatropha curcas]
17 Hb_000914_090 0.2603330913 - - PREDICTED: uncharacterized protein LOC105648257 [Jatropha curcas]
18 Hb_001619_080 0.2613129879 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000096_130 0.2634046044 - - hypothetical protein 23 [Hevea brasiliensis]
20 Hb_003095_040 0.264689178 - - hypothetical protein CICLE_v10030016mg [Citrus clementina]

Gene co-expression network

sample Hb_004296_020 Hb_004296_020 Hb_033772_050 Hb_033772_050 Hb_004296_020--Hb_033772_050 Hb_005701_030 Hb_005701_030 Hb_004296_020--Hb_005701_030 Hb_001364_030 Hb_001364_030 Hb_004296_020--Hb_001364_030 Hb_000363_140 Hb_000363_140 Hb_004296_020--Hb_000363_140 Hb_000692_020 Hb_000692_020 Hb_004296_020--Hb_000692_020 Hb_004129_150 Hb_004129_150 Hb_004296_020--Hb_004129_150 Hb_033772_050--Hb_000363_140 Hb_009486_190 Hb_009486_190 Hb_033772_050--Hb_009486_190 Hb_003992_080 Hb_003992_080 Hb_033772_050--Hb_003992_080 Hb_005568_080 Hb_005568_080 Hb_033772_050--Hb_005568_080 Hb_000326_060 Hb_000326_060 Hb_033772_050--Hb_000326_060 Hb_033772_050--Hb_004129_150 Hb_005701_030--Hb_033772_050 Hb_005701_030--Hb_001364_030 Hb_005701_030--Hb_000363_140 Hb_005701_030--Hb_000692_020 Hb_005701_030--Hb_004129_150 Hb_001364_030--Hb_000363_140 Hb_001364_030--Hb_033772_050 Hb_000260_310 Hb_000260_310 Hb_001364_030--Hb_000260_310 Hb_016604_020 Hb_016604_020 Hb_001364_030--Hb_016604_020 Hb_001364_030--Hb_009486_190 Hb_002798_050 Hb_002798_050 Hb_000363_140--Hb_002798_050 Hb_000914_090 Hb_000914_090 Hb_000363_140--Hb_000914_090 Hb_002909_070 Hb_002909_070 Hb_000363_140--Hb_002909_070 Hb_174865_030 Hb_174865_030 Hb_000363_140--Hb_174865_030 Hb_002603_060 Hb_002603_060 Hb_000692_020--Hb_002603_060 Hb_004567_020 Hb_004567_020 Hb_000692_020--Hb_004567_020 Hb_001017_070 Hb_001017_070 Hb_000692_020--Hb_001017_070 Hb_000483_480 Hb_000483_480 Hb_000692_020--Hb_000483_480 Hb_000816_230 Hb_000816_230 Hb_000692_020--Hb_000816_230 Hb_007943_140 Hb_007943_140 Hb_000692_020--Hb_007943_140 Hb_000175_130 Hb_000175_130 Hb_004129_150--Hb_000175_130 Hb_000094_110 Hb_000094_110 Hb_004129_150--Hb_000094_110 Hb_006738_010 Hb_006738_010 Hb_004129_150--Hb_006738_010 Hb_000032_350 Hb_000032_350 Hb_004129_150--Hb_000032_350 Hb_004129_150--Hb_007943_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0544156 0.123617 0 0.0300712 0 0.0159435
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.124314 0.195573 0.0605808 0.0261234 0

CAGE analysis