Hb_004297_030

Information

Type -
Description -
Location Contig4297: 78074-79075
Sequence    

Annotation

kegg
ID cmo:103502718
description uncharacterized LOC103502718
nr
ID XP_012071170.1
description PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0PJJ0
description Uncharacterized protein OS=Gossypium arboreum GN=F383_29132 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004297_030 0.0 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
2 Hb_088496_010 0.0299304673 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
3 Hb_000003_770 0.1411428603 - - -
4 Hb_015091_010 0.1548137142 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_094721_010 0.1582784995 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
6 Hb_012324_020 0.1600319401 - - -
7 Hb_000348_040 0.1708628343 - - -
8 Hb_001379_130 0.1741241545 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
9 Hb_001257_020 0.1940417577 - - -
10 Hb_063511_010 0.198384105 - - DNA-directed RNA polymerase II subunit RPB4 [Gossypium arboreum]
11 Hb_007761_050 0.2089047888 - - calcineurin-like protein [Hevea brasiliensis]
12 Hb_006501_030 0.2146858589 - - hypothetical protein POPTR_0006s17720g [Populus trichocarpa]
13 Hb_030765_010 0.2265056637 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]
14 Hb_003116_020 0.2361631382 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
15 Hb_175572_010 0.2374551814 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_145890_010 0.2465939244 - - unnamed protein product [Vitis vinifera]
17 Hb_000107_640 0.2472126307 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001951_280 0.2505727698 - - -
19 Hb_005408_040 0.2511284585 - - -
20 Hb_000563_270 0.2570879243 - - -

Gene co-expression network

sample Hb_004297_030 Hb_004297_030 Hb_088496_010 Hb_088496_010 Hb_004297_030--Hb_088496_010 Hb_000003_770 Hb_000003_770 Hb_004297_030--Hb_000003_770 Hb_015091_010 Hb_015091_010 Hb_004297_030--Hb_015091_010 Hb_094721_010 Hb_094721_010 Hb_004297_030--Hb_094721_010 Hb_012324_020 Hb_012324_020 Hb_004297_030--Hb_012324_020 Hb_000348_040 Hb_000348_040 Hb_004297_030--Hb_000348_040 Hb_088496_010--Hb_000003_770 Hb_088496_010--Hb_094721_010 Hb_001379_130 Hb_001379_130 Hb_088496_010--Hb_001379_130 Hb_088496_010--Hb_012324_020 Hb_001257_020 Hb_001257_020 Hb_088496_010--Hb_001257_020 Hb_000003_770--Hb_001379_130 Hb_000003_770--Hb_001257_020 Hb_000003_770--Hb_012324_020 Hb_000003_770--Hb_094721_010 Hb_063511_010 Hb_063511_010 Hb_015091_010--Hb_063511_010 Hb_001951_280 Hb_001951_280 Hb_015091_010--Hb_001951_280 Hb_015091_010--Hb_000348_040 Hb_015091_010--Hb_088496_010 Hb_006501_030 Hb_006501_030 Hb_015091_010--Hb_006501_030 Hb_094721_010--Hb_012324_020 Hb_094721_010--Hb_001379_130 Hb_005408_040 Hb_005408_040 Hb_094721_010--Hb_005408_040 Hb_012324_020--Hb_001379_130 Hb_012324_020--Hb_005408_040 Hb_000348_040--Hb_006501_030 Hb_000348_040--Hb_063511_010 Hb_000348_040--Hb_088496_010 Hb_000048_100 Hb_000048_100 Hb_000348_040--Hb_000048_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.058286
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0946384 0.0743841 0 0 0

CAGE analysis