Hb_004297_070

Information

Type -
Description -
Location Contig4297: 117795-121995
Sequence    

Annotation

kegg
ID pop:POPTR_0009s14820g
description hypothetical protein
nr
ID XP_006379316.1
description hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
swissprot
ID Q6VAK4
description Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1
trembl
ID U5G0X4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0009s14820g PE=4 SV=1
Gene Ontology
ID GO:0044699
description histidine-containing phosphotransfer protein 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42145: 114546-122104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004297_070 0.0 - - hypothetical protein POPTR_0009s14820g [Populus trichocarpa]
2 Hb_001377_150 0.0814819138 - - hypothetical protein JCGZ_14266 [Jatropha curcas]
3 Hb_001278_110 0.0837836859 - - PREDICTED: uncharacterized protein LOC104613296 isoform X3 [Nelumbo nucifera]
4 Hb_181288_010 0.0873342531 - - rac-GTP binding protein, putative [Ricinus communis]
5 Hb_003266_050 0.0874884527 - - PREDICTED: small nuclear ribonucleoprotein Sm D1 [Amborella trichopoda]
6 Hb_070986_010 0.0938334865 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
7 Hb_003874_020 0.095071182 - - hypothetical protein POPTR_0012s02280g [Populus trichocarpa]
8 Hb_010407_040 0.0954314581 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
9 Hb_000840_190 0.096386841 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
10 Hb_007432_080 0.0977435066 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
11 Hb_128048_010 0.0983815654 - - small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus communis]
12 Hb_000163_160 0.0995505241 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
13 Hb_001814_070 0.1004212243 - - PREDICTED: uncharacterized protein LOC105650638 [Jatropha curcas]
14 Hb_004204_120 0.1008500302 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
15 Hb_003018_120 0.1060918596 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
16 Hb_032202_090 0.1066303251 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
17 Hb_001279_070 0.1073455289 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
18 Hb_033153_090 0.1074390738 - - PREDICTED: 28 kDa heat- and acid-stable phosphoprotein [Jatropha curcas]
19 Hb_000815_040 0.1083117457 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
20 Hb_001269_320 0.1085449913 - - 40S ribosomal protein S12A [Hevea brasiliensis]

Gene co-expression network

sample Hb_004297_070 Hb_004297_070 Hb_001377_150 Hb_001377_150 Hb_004297_070--Hb_001377_150 Hb_001278_110 Hb_001278_110 Hb_004297_070--Hb_001278_110 Hb_181288_010 Hb_181288_010 Hb_004297_070--Hb_181288_010 Hb_003266_050 Hb_003266_050 Hb_004297_070--Hb_003266_050 Hb_070986_010 Hb_070986_010 Hb_004297_070--Hb_070986_010 Hb_003874_020 Hb_003874_020 Hb_004297_070--Hb_003874_020 Hb_002893_060 Hb_002893_060 Hb_001377_150--Hb_002893_060 Hb_003018_120 Hb_003018_120 Hb_001377_150--Hb_003018_120 Hb_000573_070 Hb_000573_070 Hb_001377_150--Hb_000573_070 Hb_002518_050 Hb_002518_050 Hb_001377_150--Hb_002518_050 Hb_000933_180 Hb_000933_180 Hb_001377_150--Hb_000933_180 Hb_002685_190 Hb_002685_190 Hb_001278_110--Hb_002685_190 Hb_001278_110--Hb_003266_050 Hb_002284_090 Hb_002284_090 Hb_001278_110--Hb_002284_090 Hb_001278_110--Hb_181288_010 Hb_000300_610 Hb_000300_610 Hb_001278_110--Hb_000300_610 Hb_019249_010 Hb_019249_010 Hb_181288_010--Hb_019249_010 Hb_128048_010 Hb_128048_010 Hb_181288_010--Hb_128048_010 Hb_004204_120 Hb_004204_120 Hb_181288_010--Hb_004204_120 Hb_033594_110 Hb_033594_110 Hb_181288_010--Hb_033594_110 Hb_181288_010--Hb_002518_050 Hb_002105_090 Hb_002105_090 Hb_181288_010--Hb_002105_090 Hb_005389_150 Hb_005389_150 Hb_003266_050--Hb_005389_150 Hb_000815_040 Hb_000815_040 Hb_003266_050--Hb_000815_040 Hb_010691_060 Hb_010691_060 Hb_003266_050--Hb_010691_060 Hb_002890_140 Hb_002890_140 Hb_003266_050--Hb_002890_140 Hb_003058_130 Hb_003058_130 Hb_003266_050--Hb_003058_130 Hb_070986_010--Hb_004204_120 Hb_001584_070 Hb_001584_070 Hb_070986_010--Hb_001584_070 Hb_070986_010--Hb_002105_090 Hb_000798_030 Hb_000798_030 Hb_070986_010--Hb_000798_030 Hb_010883_150 Hb_010883_150 Hb_070986_010--Hb_010883_150 Hb_001257_080 Hb_001257_080 Hb_070986_010--Hb_001257_080 Hb_009767_120 Hb_009767_120 Hb_003874_020--Hb_009767_120 Hb_004724_100 Hb_004724_100 Hb_003874_020--Hb_004724_100 Hb_001279_070 Hb_001279_070 Hb_003874_020--Hb_001279_070 Hb_004944_010 Hb_004944_010 Hb_003874_020--Hb_004944_010 Hb_004440_050 Hb_004440_050 Hb_003874_020--Hb_004440_050 Hb_000690_080 Hb_000690_080 Hb_003874_020--Hb_000690_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.82801 0.758409 1.78867 1.53224 1.98927 4.20996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.71315 5.45813 1.34659 1.6349 0.81363

CAGE analysis