Hb_004297_080

Information

Type -
Description -
Location Contig4297: 125733-127230
Sequence    

Annotation

kegg
ID pop:POPTR_0004s19640g
description hypothetical protein
nr
ID XP_012075900.1
description PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
swissprot
ID Q9SD53
description UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=2 SV=1
trembl
ID B9MYH4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s19640g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42147: 126162-126548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004297_080 0.0 - - PREDICTED: UPF0481 protein At3g47200-like [Jatropha curcas]
2 Hb_001472_140 0.1181609983 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
3 Hb_008406_030 0.1225246414 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
4 Hb_000666_120 0.1232468879 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
5 Hb_002233_080 0.1289705704 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
6 Hb_000210_160 0.1374831075 - - PREDICTED: protein YLS9-like [Jatropha curcas]
7 Hb_001675_310 0.1413105666 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA27-like isoform X1 [Jatropha curcas]
8 Hb_049915_010 0.1465849306 - - PREDICTED: uncharacterized serine-rich protein C215.13 [Jatropha curcas]
9 Hb_009476_160 0.1509383339 - - RING-H2 finger protein ATL2N, putative [Ricinus communis]
10 Hb_001999_200 0.1509643158 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
11 Hb_000836_210 0.1516236799 - - hypothetical protein JCGZ_14362 [Jatropha curcas]
12 Hb_001195_650 0.1517575421 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
13 Hb_027905_010 0.1546318055 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
14 Hb_076771_010 0.1557609958 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
15 Hb_002311_110 0.1574416336 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004586_230 0.1595700186 - - conserved hypothetical protein [Ricinus communis]
17 Hb_005408_080 0.1614921529 - - PREDICTED: U-box domain-containing protein 16 [Jatropha curcas]
18 Hb_000010_220 0.1627746114 - - PREDICTED: uncharacterized protein LOC105640277 [Jatropha curcas]
19 Hb_005056_100 0.1630433663 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor ANT [Jatropha curcas]
20 Hb_005656_160 0.1632437658 - - PREDICTED: uncharacterized protein LOC105637448 [Jatropha curcas]

Gene co-expression network

sample Hb_004297_080 Hb_004297_080 Hb_001472_140 Hb_001472_140 Hb_004297_080--Hb_001472_140 Hb_008406_030 Hb_008406_030 Hb_004297_080--Hb_008406_030 Hb_000666_120 Hb_000666_120 Hb_004297_080--Hb_000666_120 Hb_002233_080 Hb_002233_080 Hb_004297_080--Hb_002233_080 Hb_000210_160 Hb_000210_160 Hb_004297_080--Hb_000210_160 Hb_001675_310 Hb_001675_310 Hb_004297_080--Hb_001675_310 Hb_001329_080 Hb_001329_080 Hb_001472_140--Hb_001329_080 Hb_000836_210 Hb_000836_210 Hb_001472_140--Hb_000836_210 Hb_001472_140--Hb_008406_030 Hb_002875_070 Hb_002875_070 Hb_001472_140--Hb_002875_070 Hb_005408_080 Hb_005408_080 Hb_001472_140--Hb_005408_080 Hb_004241_200 Hb_004241_200 Hb_008406_030--Hb_004241_200 Hb_009557_050 Hb_009557_050 Hb_008406_030--Hb_009557_050 Hb_001195_650 Hb_001195_650 Hb_008406_030--Hb_001195_650 Hb_027905_010 Hb_027905_010 Hb_008406_030--Hb_027905_010 Hb_000666_120--Hb_001675_310 Hb_001999_200 Hb_001999_200 Hb_000666_120--Hb_001999_200 Hb_000403_100 Hb_000403_100 Hb_000666_120--Hb_000403_100 Hb_007292_050 Hb_007292_050 Hb_000666_120--Hb_007292_050 Hb_002311_110 Hb_002311_110 Hb_000666_120--Hb_002311_110 Hb_001019_020 Hb_001019_020 Hb_002233_080--Hb_001019_020 Hb_076771_010 Hb_076771_010 Hb_002233_080--Hb_076771_010 Hb_002233_080--Hb_001675_310 Hb_012272_010 Hb_012272_010 Hb_002233_080--Hb_012272_010 Hb_094437_050 Hb_094437_050 Hb_002233_080--Hb_094437_050 Hb_000563_630 Hb_000563_630 Hb_000210_160--Hb_000563_630 Hb_000210_160--Hb_001675_310 Hb_003849_200 Hb_003849_200 Hb_000210_160--Hb_003849_200 Hb_003435_040 Hb_003435_040 Hb_000210_160--Hb_003435_040 Hb_034507_090 Hb_034507_090 Hb_000210_160--Hb_034507_090 Hb_000152_170 Hb_000152_170 Hb_000210_160--Hb_000152_170 Hb_001675_310--Hb_003849_200 Hb_001675_310--Hb_000563_630 Hb_001675_310--Hb_003435_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0981992 1.97248 0.914624 2.34084 0.0666099 0.0774268
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.10059 0.04721 0.230936 0.367954

CAGE analysis