Hb_004297_090

Information

Type -
Description -
Location Contig4297: 128110-160634
Sequence    

Annotation

kegg
ID rcu:RCOM_0792580
description DNA polymerase epsilon, catalytic subunit, putative (EC:2.7.7.7)
nr
ID XP_012075886.1
description PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
swissprot
ID F4HW04
description DNA polymerase epsilon catalytic subunit A OS=Arabidopsis thaliana GN=POL2A PE=1 SV=1
trembl
ID B9SSU6
description DNA polymerase OS=Ricinus communis GN=RCOM_0792580 PE=3 SV=1
Gene Ontology
ID GO:0008622
description dna polymerase epsilon catalytic subunit a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42149: 127869-128158 , PASA_asmbl_42150: 128285-131240 , PASA_asmbl_42151: 133507-134060 , PASA_asmbl_42152: 134592-139207 , PASA_asmbl_42153: 139368-141440 , PASA_asmbl_42154: 139368-141440 , PASA_asmbl_42155: 146652-147478 , PASA_asmbl_42156: 148510-154599
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004297_090 0.0 - - PREDICTED: DNA polymerase epsilon catalytic subunit A [Jatropha curcas]
2 Hb_001677_100 0.0703826176 - - delta1-pyrroline-5-carboxylate synthase [Manihot esculenta]
3 Hb_000365_200 0.0906940245 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
4 Hb_003683_130 0.0929643397 - - PREDICTED: enolase 1, chloroplastic [Jatropha curcas]
5 Hb_000260_400 0.103361658 - - PREDICTED: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase [Jatropha curcas]
6 Hb_004883_020 0.1054894827 - - PREDICTED: uncharacterized protein LOC105647351 [Jatropha curcas]
7 Hb_009296_020 0.1216102399 desease resistance Gene Name: ATP-synt_ab_N PREDICTED: ATP synthase subunit beta, mitochondrial-like [Jatropha curcas]
8 Hb_004218_130 0.121867308 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]
9 Hb_000258_090 0.1240741884 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
10 Hb_000363_410 0.1251206527 - - hypothetical protein JCGZ_00955 [Jatropha curcas]
11 Hb_000803_120 0.1261920276 - - PREDICTED: zinc finger CCCH domain-containing protein 22-like isoform X1 [Jatropha curcas]
12 Hb_000309_030 0.1289510749 - - PREDICTED: formate dehydrogenase, mitochondrial [Jatropha curcas]
13 Hb_011214_110 0.1312786657 - - PREDICTED: ALA-interacting subunit 3-like [Jatropha curcas]
14 Hb_002317_010 0.1319278182 - - PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Jatropha curcas]
15 Hb_001434_020 0.1323800233 - - hypothetical protein RCOM_0841800 [Ricinus communis]
16 Hb_000406_090 0.1340257179 - - unknown [Populus trichocarpa]
17 Hb_007575_030 0.1341673818 - - PREDICTED: protein RCC2 homolog [Jatropha curcas]
18 Hb_001117_080 0.1344171254 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
19 Hb_052135_020 0.1344593004 - - PREDICTED: MAP kinase kinase MKK1/SSP32-like [Jatropha curcas]
20 Hb_024758_020 0.1350351169 - - acyl-CoA binding protein 3B [Vernicia fordii]

Gene co-expression network

sample Hb_004297_090 Hb_004297_090 Hb_001677_100 Hb_001677_100 Hb_004297_090--Hb_001677_100 Hb_000365_200 Hb_000365_200 Hb_004297_090--Hb_000365_200 Hb_003683_130 Hb_003683_130 Hb_004297_090--Hb_003683_130 Hb_000260_400 Hb_000260_400 Hb_004297_090--Hb_000260_400 Hb_004883_020 Hb_004883_020 Hb_004297_090--Hb_004883_020 Hb_009296_020 Hb_009296_020 Hb_004297_090--Hb_009296_020 Hb_001434_020 Hb_001434_020 Hb_001677_100--Hb_001434_020 Hb_001677_100--Hb_009296_020 Hb_001677_100--Hb_000260_400 Hb_011214_110 Hb_011214_110 Hb_001677_100--Hb_011214_110 Hb_002849_050 Hb_002849_050 Hb_001677_100--Hb_002849_050 Hb_000365_200--Hb_003683_130 Hb_000365_200--Hb_000260_400 Hb_022092_010 Hb_022092_010 Hb_000365_200--Hb_022092_010 Hb_000365_200--Hb_001677_100 Hb_006816_230 Hb_006816_230 Hb_000365_200--Hb_006816_230 Hb_003683_130--Hb_000260_400 Hb_001616_070 Hb_001616_070 Hb_003683_130--Hb_001616_070 Hb_003683_130--Hb_022092_010 Hb_000009_060 Hb_000009_060 Hb_003683_130--Hb_000009_060 Hb_005741_040 Hb_005741_040 Hb_000260_400--Hb_005741_040 Hb_002687_180 Hb_002687_180 Hb_000260_400--Hb_002687_180 Hb_002317_010 Hb_002317_010 Hb_000260_400--Hb_002317_010 Hb_000260_400--Hb_001616_070 Hb_002687_200 Hb_002687_200 Hb_000260_400--Hb_002687_200 Hb_007575_030 Hb_007575_030 Hb_004883_020--Hb_007575_030 Hb_001754_050 Hb_001754_050 Hb_004883_020--Hb_001754_050 Hb_000309_030 Hb_000309_030 Hb_004883_020--Hb_000309_030 Hb_003226_090 Hb_003226_090 Hb_004883_020--Hb_003226_090 Hb_000098_180 Hb_000098_180 Hb_004883_020--Hb_000098_180 Hb_003680_220 Hb_003680_220 Hb_009296_020--Hb_003680_220 Hb_000230_530 Hb_000230_530 Hb_009296_020--Hb_000230_530 Hb_000510_190 Hb_000510_190 Hb_009296_020--Hb_000510_190 Hb_005854_040 Hb_005854_040 Hb_009296_020--Hb_005854_040 Hb_009296_020--Hb_002687_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104145 0.390616 1.07757 0.887368 0.223052 0.147062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.100499 0.0840382 0.219458 0.971431 0.500614

CAGE analysis