Hb_004297_100

Information

Type -
Description -
Location Contig4297: 162745-164434
Sequence    

Annotation

kegg
ID tcc:TCM_022507
description 60S acidic ribosomal protein P2-4
nr
ID XP_011044769.1
description PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
swissprot
ID O24415
description 60S acidic ribosomal protein P2B OS=Zea mays GN=RPP2B PE=1 SV=1
trembl
ID A0A022R988
description Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a016591mg PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s acidic ribosomal protein p2b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42158: 162569-164425 , PASA_asmbl_42159: 163096-163530
cDNA
(Sanger)
(ID:Location)		 006_H23.ab1: 162569-164333 , 014_K11.ab1: 162566-164333 , 030_A06.ab1: 162548-164357 , 047_C24.ab1: 162569-164357 , 048_K16.ab1: 162569-164333

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004297_100 0.0 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
2 Hb_000483_160 0.056284911 - - PREDICTED: 60S ribosomal protein L34 [Jatropha curcas]
3 Hb_001019_090 0.0582583236 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]
4 Hb_005611_010 0.0735601683 - - PREDICTED: protein prune homolog [Jatropha curcas]
5 Hb_000200_210 0.0765524569 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000617_320 0.0807112132 - - 40S ribosomal protein S21B [Hevea brasiliensis]
7 Hb_023732_070 0.0834361249 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
8 Hb_000260_050 0.0848539944 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
9 Hb_007166_050 0.0859155614 - - -
10 Hb_002374_490 0.0864270688 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002307_030 0.0893053454 - - 40S ribosomal protein S15D [Hevea brasiliensis]
12 Hb_009767_120 0.0893375014 - - PREDICTED: probable prefoldin subunit 2 [Jatropha curcas]
13 Hb_007747_090 0.0894346195 - - PREDICTED: cold-inducible RNA-binding protein [Jatropha curcas]
14 Hb_001584_070 0.0894578003 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000417_110 0.0900660638 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
16 Hb_024835_030 0.0911291 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
17 Hb_001754_150 0.0922601505 - - PREDICTED: vesicle-associated membrane protein 724 [Jatropha curcas]
18 Hb_000045_130 0.0923606134 - - 60S acidic ribosomal protein P0A [Hevea brasiliensis]
19 Hb_003001_060 0.0926064822 - - wound-responsive family protein [Populus trichocarpa]
20 Hb_024650_050 0.0926647101 - - ribosomal RNA methyltransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004297_100 Hb_004297_100 Hb_000483_160 Hb_000483_160 Hb_004297_100--Hb_000483_160 Hb_001019_090 Hb_001019_090 Hb_004297_100--Hb_001019_090 Hb_005611_010 Hb_005611_010 Hb_004297_100--Hb_005611_010 Hb_000200_210 Hb_000200_210 Hb_004297_100--Hb_000200_210 Hb_000617_320 Hb_000617_320 Hb_004297_100--Hb_000617_320 Hb_023732_070 Hb_023732_070 Hb_004297_100--Hb_023732_070 Hb_000260_050 Hb_000260_050 Hb_000483_160--Hb_000260_050 Hb_000483_160--Hb_001019_090 Hb_000417_110 Hb_000417_110 Hb_000483_160--Hb_000417_110 Hb_002477_240 Hb_002477_240 Hb_000483_160--Hb_002477_240 Hb_004899_220 Hb_004899_220 Hb_000483_160--Hb_004899_220 Hb_007166_050 Hb_007166_050 Hb_001019_090--Hb_007166_050 Hb_001019_090--Hb_000617_320 Hb_000152_430 Hb_000152_430 Hb_001019_090--Hb_000152_430 Hb_001754_150 Hb_001754_150 Hb_001019_090--Hb_001754_150 Hb_005611_010--Hb_007166_050 Hb_005611_010--Hb_001019_090 Hb_005611_010--Hb_000200_210 Hb_005611_010--Hb_000483_160 Hb_022250_040 Hb_022250_040 Hb_005611_010--Hb_022250_040 Hb_000500_130 Hb_000500_130 Hb_000200_210--Hb_000500_130 Hb_006447_010 Hb_006447_010 Hb_000200_210--Hb_006447_010 Hb_000200_210--Hb_001019_090 Hb_125000_010 Hb_125000_010 Hb_000200_210--Hb_125000_010 Hb_003874_020 Hb_003874_020 Hb_000200_210--Hb_003874_020 Hb_000617_320--Hb_007166_050 Hb_007632_250 Hb_007632_250 Hb_000617_320--Hb_007632_250 Hb_118977_020 Hb_118977_020 Hb_000617_320--Hb_118977_020 Hb_003086_110 Hb_003086_110 Hb_000617_320--Hb_003086_110 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_001824_070 Hb_001824_070 Hb_023732_070--Hb_001824_070 Hb_000444_050 Hb_000444_050 Hb_023732_070--Hb_000444_050 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1209.94 361.202 262.371 359.764 849.762 1523.57
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1345.36 1981.8 755.542 292.243 85.6325

CAGE analysis