Hb_004306_060

Information

Type -
Description -
Location Contig4306: 28759-29503
Sequence    

Annotation

kegg
ID rcu:RCOM_1719180
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_012085832.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
swissprot
ID Q9LJR6
description Putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E96 PE=3 SV=1
trembl
ID A0A067K3I5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17522 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_060 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g25060, mitochondrial [Jatropha curcas]
2 Hb_000479_130 0.0647120178 - - PREDICTED: pentatricopeptide repeat-containing protein At5g39350 [Jatropha curcas]
3 Hb_000934_270 0.0997145709 - - PREDICTED: pentatricopeptide repeat-containing protein At3g21470 [Populus euphratica]
4 Hb_000236_140 0.1000091856 - - PREDICTED: splicing regulatory glutamine/lysine-rich protein 1-like [Jatropha curcas]
5 Hb_002498_060 0.1066250713 - - ATP binding protein, putative [Ricinus communis]
6 Hb_000059_220 0.107555637 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
7 Hb_000193_250 0.110129688 - - PREDICTED: pentatricopeptide repeat-containing protein At5g61400 [Jatropha curcas]
8 Hb_000179_210 0.110245483 - - PREDICTED: uncharacterized protein LOC105637927 [Jatropha curcas]
9 Hb_007075_050 0.1106404949 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_152439_020 0.1128697726 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
11 Hb_004128_180 0.1149760435 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_000576_040 0.1176209521 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15130 [Jatropha curcas]
13 Hb_000162_040 0.1217610006 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
14 Hb_007416_270 0.1232458667 - - PREDICTED: uncharacterized protein LOC105637478 [Jatropha curcas]
15 Hb_119600_040 0.1232711604 - - hypothetical protein JCGZ_08045 [Jatropha curcas]
16 Hb_178968_110 0.1237101578 - - PREDICTED: uncharacterized protein LOC105630268 [Jatropha curcas]
17 Hb_003687_100 0.1264993413 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Jatropha curcas]
18 Hb_010710_040 0.1265976716 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_008085_040 0.1272315593 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
20 Hb_001226_020 0.1274338177 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial-like [Jatropha curcas]

Gene co-expression network

sample Hb_004306_060 Hb_004306_060 Hb_000479_130 Hb_000479_130 Hb_004306_060--Hb_000479_130 Hb_000934_270 Hb_000934_270 Hb_004306_060--Hb_000934_270 Hb_000236_140 Hb_000236_140 Hb_004306_060--Hb_000236_140 Hb_002498_060 Hb_002498_060 Hb_004306_060--Hb_002498_060 Hb_000059_220 Hb_000059_220 Hb_004306_060--Hb_000059_220 Hb_000193_250 Hb_000193_250 Hb_004306_060--Hb_000193_250 Hb_000479_130--Hb_000236_140 Hb_007416_270 Hb_007416_270 Hb_000479_130--Hb_007416_270 Hb_000479_130--Hb_000934_270 Hb_000172_560 Hb_000172_560 Hb_000479_130--Hb_000172_560 Hb_007075_050 Hb_007075_050 Hb_000479_130--Hb_007075_050 Hb_010172_050 Hb_010172_050 Hb_000934_270--Hb_010172_050 Hb_178968_110 Hb_178968_110 Hb_000934_270--Hb_178968_110 Hb_000022_250 Hb_000022_250 Hb_000934_270--Hb_000022_250 Hb_003266_130 Hb_003266_130 Hb_000934_270--Hb_003266_130 Hb_029584_130 Hb_029584_130 Hb_000934_270--Hb_029584_130 Hb_000007_150 Hb_000007_150 Hb_000934_270--Hb_000007_150 Hb_003687_100 Hb_003687_100 Hb_000236_140--Hb_003687_100 Hb_004128_180 Hb_004128_180 Hb_000236_140--Hb_004128_180 Hb_000236_140--Hb_007416_270 Hb_000236_140--Hb_007075_050 Hb_000236_140--Hb_000172_560 Hb_152439_020 Hb_152439_020 Hb_002498_060--Hb_152439_020 Hb_000157_010 Hb_000157_010 Hb_002498_060--Hb_000157_010 Hb_002498_060--Hb_004128_180 Hb_002498_060--Hb_000236_140 Hb_001856_020 Hb_001856_020 Hb_002498_060--Hb_001856_020 Hb_000997_400 Hb_000997_400 Hb_000059_220--Hb_000997_400 Hb_006501_040 Hb_006501_040 Hb_000059_220--Hb_006501_040 Hb_000179_210 Hb_000179_210 Hb_000059_220--Hb_000179_210 Hb_000059_220--Hb_178968_110 Hb_000614_230 Hb_000614_230 Hb_000059_220--Hb_000614_230 Hb_000297_200 Hb_000297_200 Hb_000059_220--Hb_000297_200 Hb_000193_250--Hb_152439_020 Hb_000193_250--Hb_001856_020 Hb_004800_160 Hb_004800_160 Hb_000193_250--Hb_004800_160 Hb_000427_030 Hb_000427_030 Hb_000193_250--Hb_000427_030 Hb_000193_250--Hb_000179_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.78409 0.619838 0.361368 0.3125 1.80556 1.93028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.01154 2.20223 4.92733 0.671213 0.606995

CAGE analysis