Hb_004306_130

Information

Type -
Description -
Location Contig4306: 110407-111564
Sequence    

Annotation

kegg
ID pop:POPTR_0002s24530g
description POPTRDRAFT_645432; zinc finger family protein
nr
ID XP_012085094.1
description PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JUA1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17536 PE=4 SV=1
Gene Ontology
ID GO:0005515
description zinc finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42194: 110444-111124 , PASA_asmbl_42195: 111178-111700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004306_130 0.0 - - PREDICTED: uncharacterized protein LOC105644385 isoform X1 [Jatropha curcas]
2 Hb_000866_040 0.1011847035 - - PREDICTED: cytochrome P450 86A8-like [Jatropha curcas]
3 Hb_000416_190 0.1214015431 - - -
4 Hb_001266_130 0.1226965714 - - PREDICTED: soluble inorganic pyrophosphatase-like [Jatropha curcas]
5 Hb_002095_050 0.1232010141 - - PREDICTED: uncharacterized protein LOC104447479 [Eucalyptus grandis]
6 Hb_002675_230 0.1496405206 - - PREDICTED: glutathione S-transferase L3-like [Populus euphratica]
7 Hb_005993_030 0.1523558456 - - putative senescence-associated protein SAG102 [Populus trichocarpa]
8 Hb_000737_010 0.1555601986 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X1 [Jatropha curcas]
9 Hb_001689_070 0.1576628664 - - cytochrome P450, putative [Ricinus communis]
10 Hb_010683_070 0.1655942213 - - PREDICTED: DNA (cytosine-5)-methyltransferase CMT2 isoform X1 [Jatropha curcas]
11 Hb_000189_160 0.1689348021 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
12 Hb_006681_030 0.1707030418 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Populus euphratica]
13 Hb_000917_200 0.1712627562 - - hypothetical protein PRUPE_ppa010555mg [Prunus persica]
14 Hb_000120_300 0.1743308434 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X1 [Eucalyptus grandis]
15 Hb_001500_080 0.1762435139 - - PREDICTED: uncharacterized protein LOC105647337 isoform X1 [Jatropha curcas]
16 Hb_001244_050 0.1765274326 - - PREDICTED: uncharacterized protein LOC105643334 [Jatropha curcas]
17 Hb_000046_430 0.1770690622 - - hypothetical protein JCGZ_02013 [Jatropha curcas]
18 Hb_000062_050 0.1773166894 - - protein binding protein, putative [Ricinus communis]
19 Hb_007120_130 0.1779183698 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003687_040 0.1779784968 - - PREDICTED: uncharacterized protein LOC105632153 [Jatropha curcas]

Gene co-expression network

sample Hb_004306_130 Hb_004306_130 Hb_000866_040 Hb_000866_040 Hb_004306_130--Hb_000866_040 Hb_000416_190 Hb_000416_190 Hb_004306_130--Hb_000416_190 Hb_001266_130 Hb_001266_130 Hb_004306_130--Hb_001266_130 Hb_002095_050 Hb_002095_050 Hb_004306_130--Hb_002095_050 Hb_002675_230 Hb_002675_230 Hb_004306_130--Hb_002675_230 Hb_005993_030 Hb_005993_030 Hb_004306_130--Hb_005993_030 Hb_000866_040--Hb_005993_030 Hb_001135_010 Hb_001135_010 Hb_000866_040--Hb_001135_010 Hb_002918_120 Hb_002918_120 Hb_000866_040--Hb_002918_120 Hb_004446_060 Hb_004446_060 Hb_000866_040--Hb_004446_060 Hb_001500_080 Hb_001500_080 Hb_000866_040--Hb_001500_080 Hb_000009_420 Hb_000009_420 Hb_000416_190--Hb_000009_420 Hb_010868_040 Hb_010868_040 Hb_000416_190--Hb_010868_040 Hb_000416_190--Hb_002095_050 Hb_003398_040 Hb_003398_040 Hb_000416_190--Hb_003398_040 Hb_000120_300 Hb_000120_300 Hb_000416_190--Hb_000120_300 Hb_000020_020 Hb_000020_020 Hb_001266_130--Hb_000020_020 Hb_008878_020 Hb_008878_020 Hb_001266_130--Hb_008878_020 Hb_000212_270 Hb_000212_270 Hb_001266_130--Hb_000212_270 Hb_000062_050 Hb_000062_050 Hb_001266_130--Hb_000062_050 Hb_001501_020 Hb_001501_020 Hb_001266_130--Hb_001501_020 Hb_000046_430 Hb_000046_430 Hb_001266_130--Hb_000046_430 Hb_001776_130 Hb_001776_130 Hb_002095_050--Hb_001776_130 Hb_002095_050--Hb_005993_030 Hb_003687_040 Hb_003687_040 Hb_002095_050--Hb_003687_040 Hb_014361_170 Hb_014361_170 Hb_002095_050--Hb_014361_170 Hb_001689_070 Hb_001689_070 Hb_002675_230--Hb_001689_070 Hb_001244_050 Hb_001244_050 Hb_002675_230--Hb_001244_050 Hb_002675_230--Hb_000866_040 Hb_009102_010 Hb_009102_010 Hb_002675_230--Hb_009102_010 Hb_004324_320 Hb_004324_320 Hb_002675_230--Hb_004324_320 Hb_000731_280 Hb_000731_280 Hb_005993_030--Hb_000731_280 Hb_005993_030--Hb_002918_120 Hb_005993_030--Hb_003687_040 Hb_000941_010 Hb_000941_010 Hb_005993_030--Hb_000941_010 Hb_001195_740 Hb_001195_740 Hb_005993_030--Hb_001195_740
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.38416 3.43214 14.2609 4.06565 0.378002 1.02398
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0846874 0.199844 0 5.7412 7.01667

CAGE analysis