Hb_004308_010

Information

Type -
Description -
Location Contig4308: 13823-17250
Sequence    

Annotation

kegg
ID mdm:103455646
description myosin-15-like
nr
ID KDO73639.1
description hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
swissprot
ID Q0WPU1
description Myosin-15 OS=Arabidopsis thaliana GN=XI-I PE=1 SV=1
trembl
ID A0A067G1Z8
description Uncharacterized protein (Fragment) OS=Citrus sinensis GN=CISIN_1g0004672mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004308_010 0.0 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
2 Hb_003333_070 0.1545266847 - - Ent-kaurenoic acid oxidase, putative [Ricinus communis]
3 Hb_000577_060 0.1556692778 - - -
4 Hb_000753_270 0.1630184583 - - -
5 Hb_002309_030 0.1630378311 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
6 Hb_000188_080 0.1658805809 - - PREDICTED: uncharacterized protein LOC105629484 [Jatropha curcas]
7 Hb_010866_020 0.1725116002 - - unnamed protein product [Vitis vinifera]
8 Hb_000069_290 0.1850901795 - - hypothetical protein POPTR_0014s09500g [Populus trichocarpa]
9 Hb_001514_260 0.202263281 - - -
10 Hb_000347_520 0.2046356821 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
11 Hb_000367_110 0.2123268578 - - PREDICTED: monodehydroascorbate reductase, chloroplastic isoform X1 [Sesamum indicum]
12 Hb_005870_010 0.214856663 - - -
13 Hb_054581_010 0.2155242308 - - Type I inositol-1,4,5-trisphosphate 5-phosphatase CVP2 [Theobroma cacao]
14 Hb_006469_110 0.2224560809 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
15 Hb_000614_310 0.2231401515 - - conserved hypothetical protein [Ricinus communis]
16 Hb_008535_020 0.2267194651 transcription factor TF Family: bHLH basic helix-loop-helix family protein [Populus trichocarpa]
17 Hb_002641_170 0.2350714406 - - zinc finger protein, putative [Ricinus communis]
18 Hb_005015_090 0.2353484239 - - PREDICTED: cytochrome P450 78A7 [Jatropha curcas]
19 Hb_001247_050 0.246523661 - - PREDICTED: WAT1-related protein At1g09380 [Jatropha curcas]
20 Hb_000170_180 0.2505083699 - - PREDICTED: uncharacterized protein LOC105109433 [Populus euphratica]

Gene co-expression network

sample Hb_004308_010 Hb_004308_010 Hb_003333_070 Hb_003333_070 Hb_004308_010--Hb_003333_070 Hb_000577_060 Hb_000577_060 Hb_004308_010--Hb_000577_060 Hb_000753_270 Hb_000753_270 Hb_004308_010--Hb_000753_270 Hb_002309_030 Hb_002309_030 Hb_004308_010--Hb_002309_030 Hb_000188_080 Hb_000188_080 Hb_004308_010--Hb_000188_080 Hb_010866_020 Hb_010866_020 Hb_004308_010--Hb_010866_020 Hb_003333_070--Hb_000188_080 Hb_005015_090 Hb_005015_090 Hb_003333_070--Hb_005015_090 Hb_003333_070--Hb_002309_030 Hb_008535_020 Hb_008535_020 Hb_003333_070--Hb_008535_020 Hb_005914_190 Hb_005914_190 Hb_003333_070--Hb_005914_190 Hb_000577_060--Hb_000753_270 Hb_000069_290 Hb_000069_290 Hb_000577_060--Hb_000069_290 Hb_000614_310 Hb_000614_310 Hb_000577_060--Hb_000614_310 Hb_000577_060--Hb_000188_080 Hb_054581_010 Hb_054581_010 Hb_000577_060--Hb_054581_010 Hb_000753_270--Hb_000069_290 Hb_000753_270--Hb_054581_010 Hb_000753_270--Hb_000614_310 Hb_027450_020 Hb_027450_020 Hb_000753_270--Hb_027450_020 Hb_006469_110 Hb_006469_110 Hb_002309_030--Hb_006469_110 Hb_002309_030--Hb_008535_020 Hb_002309_030--Hb_000188_080 Hb_002186_120 Hb_002186_120 Hb_002309_030--Hb_002186_120 Hb_000188_080--Hb_008535_020 Hb_000325_090 Hb_000325_090 Hb_000188_080--Hb_000325_090 Hb_001247_050 Hb_001247_050 Hb_000188_080--Hb_001247_050 Hb_000566_060 Hb_000566_060 Hb_000188_080--Hb_000566_060 Hb_005870_010 Hb_005870_010 Hb_010866_020--Hb_005870_010 Hb_000347_520 Hb_000347_520 Hb_010866_020--Hb_000347_520 Hb_010866_020--Hb_006469_110 Hb_000170_170 Hb_000170_170 Hb_010866_020--Hb_000170_170 Hb_087388_010 Hb_087388_010 Hb_010866_020--Hb_087388_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.11004 2.03791 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.322291 0 0 0 0

CAGE analysis