Hb_004308_020

Information

Type -
Description -
Location Contig4308: 16905-17189
Sequence    

Annotation

kegg
ID pop:POPTR_0005s15590g
description hypothetical protein
nr
ID XP_006383447.1
description hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GG63
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s15590g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42200: 17739-17861
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004308_020 0.0 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
2 Hb_001810_040 0.1562839605 - - -
3 Hb_000352_240 0.1809577222 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_001431_100 0.1980983786 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
5 Hb_006469_110 0.1992593572 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
6 Hb_002309_030 0.2022161219 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
7 Hb_001369_500 0.2031315071 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
8 Hb_015175_060 0.2043057632 - - copper transport protein atox1, putative [Ricinus communis]
9 Hb_016734_050 0.2101924994 transcription factor TF Family: C2C2-GATA GATA transcription factor, putative [Ricinus communis]
10 Hb_010638_030 0.2127792641 - - oleosin1 [Plukenetia volubilis]
11 Hb_004785_050 0.2156304276 - - PREDICTED: serine decarboxylase [Jatropha curcas]
12 Hb_000635_020 0.2241897604 - - conserved hypothetical protein [Ricinus communis]
13 Hb_056718_010 0.2242826883 - - hypothetical protein JCGZ_11777 [Jatropha curcas]
14 Hb_010080_040 0.2298984837 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001514_260 0.2306431727 - - -
16 Hb_003540_010 0.2308970377 - - -
17 Hb_012799_080 0.2309944227 transcription factor TF Family: MYB Myb domain protein 18, putative [Theobroma cacao]
18 Hb_003216_010 0.2315984295 - - glycosyl hydrolase family protein [Populus trichocarpa]
19 Hb_008196_010 0.2321562387 - - unnamed protein product [Coffea canephora]
20 Hb_000917_220 0.2328022892 - - clavata3/esr-related 12 family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_004308_020 Hb_004308_020 Hb_001810_040 Hb_001810_040 Hb_004308_020--Hb_001810_040 Hb_000352_240 Hb_000352_240 Hb_004308_020--Hb_000352_240 Hb_001431_100 Hb_001431_100 Hb_004308_020--Hb_001431_100 Hb_006469_110 Hb_006469_110 Hb_004308_020--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_004308_020--Hb_002309_030 Hb_001369_500 Hb_001369_500 Hb_004308_020--Hb_001369_500 Hb_023768_010 Hb_023768_010 Hb_001810_040--Hb_023768_010 Hb_002320_050 Hb_002320_050 Hb_001810_040--Hb_002320_050 Hb_000470_060 Hb_000470_060 Hb_001810_040--Hb_000470_060 Hb_002277_020 Hb_002277_020 Hb_001810_040--Hb_002277_020 Hb_000429_080 Hb_000429_080 Hb_001810_040--Hb_000429_080 Hb_000352_240--Hb_001810_040 Hb_003226_130 Hb_003226_130 Hb_000352_240--Hb_003226_130 Hb_000358_130 Hb_000358_130 Hb_000352_240--Hb_000358_130 Hb_016734_050 Hb_016734_050 Hb_000352_240--Hb_016734_050 Hb_000035_510 Hb_000035_510 Hb_000352_240--Hb_000035_510 Hb_007100_010 Hb_007100_010 Hb_001431_100--Hb_007100_010 Hb_001431_100--Hb_006469_110 Hb_008971_030 Hb_008971_030 Hb_001431_100--Hb_008971_030 Hb_001976_070 Hb_001976_070 Hb_001431_100--Hb_001976_070 Hb_064194_010 Hb_064194_010 Hb_001431_100--Hb_064194_010 Hb_006469_110--Hb_002309_030 Hb_000347_520 Hb_000347_520 Hb_006469_110--Hb_000347_520 Hb_122079_010 Hb_122079_010 Hb_006469_110--Hb_122079_010 Hb_061335_010 Hb_061335_010 Hb_006469_110--Hb_061335_010 Hb_000053_150 Hb_000053_150 Hb_006469_110--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_006469_110--Hb_010812_080 Hb_003333_070 Hb_003333_070 Hb_002309_030--Hb_003333_070 Hb_004308_010 Hb_004308_010 Hb_002309_030--Hb_004308_010 Hb_008535_020 Hb_008535_020 Hb_002309_030--Hb_008535_020 Hb_000188_080 Hb_000188_080 Hb_002309_030--Hb_000188_080 Hb_002186_120 Hb_002186_120 Hb_002309_030--Hb_002186_120 Hb_001369_500--Hb_001810_040 Hb_001369_500--Hb_002320_050 Hb_153774_010 Hb_153774_010 Hb_001369_500--Hb_153774_010 Hb_126711_010 Hb_126711_010 Hb_001369_500--Hb_126711_010 Hb_001369_500--Hb_000358_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.362584 1.83857 3.40017 21.1722 0.345328 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.28295 1.012 0 0 0

CAGE analysis