Hb_004310_030

Information

Type -
Description -
Location Contig4310: 18452-23964
Sequence    

Annotation

kegg
ID rcu:RCOM_1608280
description leucine carboxyl methyltransferase, putative
nr
ID XP_012083696.1
description PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
swissprot
ID Q8BYR1
description tRNA wybutosine-synthesizing protein 4 OS=Mus musculus GN=Lcmt2 PE=2 SV=4
trembl
ID A0A067JY98
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14628 PE=4 SV=1
Gene Ontology
ID GO:0008168
description trna wybutosine-synthesizing protein 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42241: 18501-24204 , PASA_asmbl_42242: 20409-24204
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_030 0.0 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
2 Hb_007254_040 0.0759571846 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
3 Hb_008554_020 0.0826505552 - - -
4 Hb_007894_140 0.0838227784 - - PREDICTED: polyadenylate-binding protein-interacting protein 4 [Jatropha curcas]
5 Hb_000638_080 0.0872864926 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
6 Hb_001135_050 0.0893081697 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
7 Hb_005539_030 0.093506016 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
8 Hb_004812_010 0.0935305492 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
9 Hb_002681_020 0.0938993048 - - aldose 1-epimerase, putative [Ricinus communis]
10 Hb_000169_010 0.0949254907 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
11 Hb_029879_110 0.0952744003 - - PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial [Jatropha curcas]
12 Hb_004970_110 0.0967650262 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
13 Hb_000179_170 0.098349319 - - PREDICTED: protein bem46 isoform X1 [Jatropha curcas]
14 Hb_004221_010 0.0986232624 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
15 Hb_001248_050 0.0990298674 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
16 Hb_005056_060 0.101729749 - - PREDICTED: prostamide/prostaglandin F synthase isoform X1 [Jatropha curcas]
17 Hb_001221_410 0.1034934351 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
18 Hb_000483_360 0.1045722064 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
19 Hb_150360_030 0.1049420176 - - PREDICTED: F-box/WD-40 repeat-containing protein At3g52030-like [Jatropha curcas]
20 Hb_011310_190 0.1049882289 - - PREDICTED: uncharacterized protein LOC105637641 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004310_030 Hb_004310_030 Hb_007254_040 Hb_007254_040 Hb_004310_030--Hb_007254_040 Hb_008554_020 Hb_008554_020 Hb_004310_030--Hb_008554_020 Hb_007894_140 Hb_007894_140 Hb_004310_030--Hb_007894_140 Hb_000638_080 Hb_000638_080 Hb_004310_030--Hb_000638_080 Hb_001135_050 Hb_001135_050 Hb_004310_030--Hb_001135_050 Hb_005539_030 Hb_005539_030 Hb_004310_030--Hb_005539_030 Hb_007254_040--Hb_008554_020 Hb_007317_180 Hb_007317_180 Hb_007254_040--Hb_007317_180 Hb_000169_010 Hb_000169_010 Hb_007254_040--Hb_000169_010 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_004970_110 Hb_004970_110 Hb_007254_040--Hb_004970_110 Hb_007254_040--Hb_001135_050 Hb_008554_020--Hb_007317_180 Hb_008554_020--Hb_011310_190 Hb_003052_100 Hb_003052_100 Hb_008554_020--Hb_003052_100 Hb_117134_010 Hb_117134_010 Hb_008554_020--Hb_117134_010 Hb_033153_050 Hb_033153_050 Hb_007894_140--Hb_033153_050 Hb_007590_080 Hb_007590_080 Hb_007894_140--Hb_007590_080 Hb_007218_080 Hb_007218_080 Hb_007894_140--Hb_007218_080 Hb_001862_190 Hb_001862_190 Hb_007894_140--Hb_001862_190 Hb_006663_100 Hb_006663_100 Hb_007894_140--Hb_006663_100 Hb_007336_020 Hb_007336_020 Hb_007894_140--Hb_007336_020 Hb_000720_120 Hb_000720_120 Hb_000638_080--Hb_000720_120 Hb_000638_080--Hb_001135_050 Hb_000638_080--Hb_005539_030 Hb_000638_080--Hb_000169_010 Hb_004048_070 Hb_004048_070 Hb_000638_080--Hb_004048_070 Hb_001221_410 Hb_001221_410 Hb_000638_080--Hb_001221_410 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_003392_040 Hb_003392_040 Hb_001135_050--Hb_003392_040 Hb_001135_050--Hb_000169_010 Hb_001135_050--Hb_004048_070 Hb_005539_030--Hb_000169_010 Hb_005539_030--Hb_004970_110 Hb_000483_360 Hb_000483_360 Hb_005539_030--Hb_000483_360 Hb_005539_030--Hb_004048_070 Hb_005539_030--Hb_007254_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.0468 15.3469 8.87165 11.415 26.5084 32.7675
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
60.5379 24.6771 22.4431 18.3449 11.4266

CAGE analysis