Hb_004310_050

Information

Type -
Description -
Location Contig4310: 35212-40426
Sequence    

Annotation

kegg
ID rcu:RCOM_1608260
description serine/threonine protein kinase, putative (EC:2.7.11.1)
nr
ID XP_012083699.1
description PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
swissprot
ID Q39183
description Serine/threonine-protein kinase D6PKL2 OS=Arabidopsis thaliana GN=D6PKL2 PE=1 SV=1
trembl
ID A0A067KAL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14630 PE=4 SV=1
Gene Ontology
ID GO:0004672
description serine threonine-protein kinase d6pk

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42248: 35262-40400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_050 0.0 - - PREDICTED: serine/threonine-protein kinase D6PK [Jatropha curcas]
2 Hb_010080_060 0.0737381522 - - receptor protein kinase, putative [Ricinus communis]
3 Hb_000046_450 0.0824712388 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
4 Hb_000699_250 0.0906152475 - - Poly(rC)-binding protein, putative [Ricinus communis]
5 Hb_000865_080 0.0971184548 - - arsenite-resistance protein, putative [Ricinus communis]
6 Hb_008714_020 0.0976375547 - - PREDICTED: GTP-binding protein SAR1A-like [Jatropha curcas]
7 Hb_006816_300 0.0989713438 - - PREDICTED: importin subunit alpha-2 [Jatropha curcas]
8 Hb_004734_060 0.1005905398 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 32 isoform X1 [Jatropha curcas]
9 Hb_002601_120 0.1020669477 - - PREDICTED: uncharacterized protein LOC105634921 [Jatropha curcas]
10 Hb_012395_160 0.1021186884 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
11 Hb_000915_050 0.1044611352 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001900_110 0.1049229104 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit E [Jatropha curcas]
13 Hb_005122_080 0.1052438611 - - prokaryotic DNA topoisomerase, putative [Ricinus communis]
14 Hb_000997_090 0.1081414769 - - PREDICTED: uncharacterized protein LOC105632095 [Jatropha curcas]
15 Hb_002270_010 0.1083552835 - - Chaperone protein dnaJ, putative [Ricinus communis]
16 Hb_000997_030 0.1087267422 - - PREDICTED: MATH domain-containing protein At5g43560-like [Jatropha curcas]
17 Hb_000209_020 0.1089637637 - - PREDICTED: uncharacterized protein At4g26450 isoform X3 [Jatropha curcas]
18 Hb_004032_180 0.109607177 - - PREDICTED: myosin heavy chain, non-muscle [Jatropha curcas]
19 Hb_003531_060 0.1097780933 - - unnamed protein product [Coffea canephora]
20 Hb_042487_010 0.1100354166 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 9-like [Jatropha curcas]

Gene co-expression network

sample Hb_004310_050 Hb_004310_050 Hb_010080_060 Hb_010080_060 Hb_004310_050--Hb_010080_060 Hb_000046_450 Hb_000046_450 Hb_004310_050--Hb_000046_450 Hb_000699_250 Hb_000699_250 Hb_004310_050--Hb_000699_250 Hb_000865_080 Hb_000865_080 Hb_004310_050--Hb_000865_080 Hb_008714_020 Hb_008714_020 Hb_004310_050--Hb_008714_020 Hb_006816_300 Hb_006816_300 Hb_004310_050--Hb_006816_300 Hb_000227_380 Hb_000227_380 Hb_010080_060--Hb_000227_380 Hb_033152_080 Hb_033152_080 Hb_010080_060--Hb_033152_080 Hb_000002_440 Hb_000002_440 Hb_010080_060--Hb_000002_440 Hb_000997_090 Hb_000997_090 Hb_010080_060--Hb_000997_090 Hb_005122_080 Hb_005122_080 Hb_010080_060--Hb_005122_080 Hb_000046_450--Hb_000699_250 Hb_000046_450--Hb_008714_020 Hb_000046_450--Hb_006816_300 Hb_025477_060 Hb_025477_060 Hb_000046_450--Hb_025477_060 Hb_001019_170 Hb_001019_170 Hb_000046_450--Hb_001019_170 Hb_007849_020 Hb_007849_020 Hb_000046_450--Hb_007849_020 Hb_000340_160 Hb_000340_160 Hb_000699_250--Hb_000340_160 Hb_042487_010 Hb_042487_010 Hb_000699_250--Hb_042487_010 Hb_000699_250--Hb_008714_020 Hb_004970_150 Hb_004970_150 Hb_000699_250--Hb_004970_150 Hb_004037_030 Hb_004037_030 Hb_000699_250--Hb_004037_030 Hb_000291_190 Hb_000291_190 Hb_000865_080--Hb_000291_190 Hb_000224_060 Hb_000224_060 Hb_000865_080--Hb_000224_060 Hb_000363_130 Hb_000363_130 Hb_000865_080--Hb_000363_130 Hb_000865_080--Hb_004970_150 Hb_023827_040 Hb_023827_040 Hb_000865_080--Hb_023827_040 Hb_000025_360 Hb_000025_360 Hb_000865_080--Hb_000025_360 Hb_008714_020--Hb_001019_170 Hb_010180_040 Hb_010180_040 Hb_008714_020--Hb_010180_040 Hb_001040_160 Hb_001040_160 Hb_008714_020--Hb_001040_160 Hb_027028_020 Hb_027028_020 Hb_008714_020--Hb_027028_020 Hb_006816_300--Hb_007849_020 Hb_002105_080 Hb_002105_080 Hb_006816_300--Hb_002105_080 Hb_003018_160 Hb_003018_160 Hb_006816_300--Hb_003018_160 Hb_006816_300--Hb_000227_380 Hb_000250_070 Hb_000250_070 Hb_006816_300--Hb_000250_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.221 94.1517 17.3227 34.2438 75.6754 131.099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3853 21.6095 57.6352 50.973 15.3561

CAGE analysis