Hb_004310_060

Information

Type -
Description -
Location Contig4310: 44549-53944
Sequence    

Annotation

kegg
ID rcu:RCOM_1608150
description hypothetical protein
nr
ID XP_012083704.1
description PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID F4HVW5
description Protein VASCULAR ASSOCIATED DEATH 1, chloroplastic OS=Arabidopsis thaliana GN=VAD1 PE=1 SV=1
trembl
ID A0A067K9A7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14631 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42250: 44640-53944 , PASA_asmbl_42251: 51584-52198 , PASA_asmbl_42252: 49977-50474 , PASA_asmbl_42253: 49199-49541
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_060 0.0 - - PREDICTED: protein VASCULAR ASSOCIATED DEATH 1, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_005147_110 0.0547489563 - - eukaryotic translation elongation factor 1B gamma-subunit [Hevea brasiliensis]
3 Hb_000300_280 0.0550743844 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 isoform X1 [Jatropha curcas]
4 Hb_008725_250 0.0617148043 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
5 Hb_000879_140 0.0628940183 - - PREDICTED: uncharacterized protein DDB_G0283697-like isoform X2 [Jatropha curcas]
6 Hb_005914_230 0.0650781562 - - PREDICTED: pre-mRNA-processing factor 19 homolog 1 [Jatropha curcas]
7 Hb_018663_020 0.0676858531 - - PREDICTED: nuclear pore complex protein NUP1 isoform X2 [Jatropha curcas]
8 Hb_001226_180 0.0742138061 - - peptidyl-prolyl cis-trans isomerase, putative [Ricinus communis]
9 Hb_000236_320 0.0747741121 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
10 Hb_000462_150 0.0755122125 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
11 Hb_001341_030 0.0761165037 transcription factor TF Family: LOB LOB domain-containing protein 1 [Theobroma cacao]
12 Hb_000373_270 0.0769422795 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
13 Hb_001969_040 0.0769709257 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
14 Hb_000370_030 0.0774947295 - - PREDICTED: uncharacterized protein LOC105639493 [Jatropha curcas]
15 Hb_000803_300 0.0775880725 - - nuclear movement protein nudc, putative [Ricinus communis]
16 Hb_042083_070 0.079097308 - - Glycogen synthase kinase-3 beta, putative [Ricinus communis]
17 Hb_001366_040 0.080621003 transcription factor TF Family: SNF2 PREDICTED: endoribonuclease Dicer homolog 1 [Jatropha curcas]
18 Hb_003384_030 0.081812888 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
19 Hb_010866_040 0.083124437 - - PREDICTED: metal transporter Nramp2-like [Jatropha curcas]
20 Hb_028639_060 0.0837556446 - - transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_004310_060 Hb_004310_060 Hb_005147_110 Hb_005147_110 Hb_004310_060--Hb_005147_110 Hb_000300_280 Hb_000300_280 Hb_004310_060--Hb_000300_280 Hb_008725_250 Hb_008725_250 Hb_004310_060--Hb_008725_250 Hb_000879_140 Hb_000879_140 Hb_004310_060--Hb_000879_140 Hb_005914_230 Hb_005914_230 Hb_004310_060--Hb_005914_230 Hb_018663_020 Hb_018663_020 Hb_004310_060--Hb_018663_020 Hb_005147_110--Hb_008725_250 Hb_001341_030 Hb_001341_030 Hb_005147_110--Hb_001341_030 Hb_005147_110--Hb_005914_230 Hb_005147_110--Hb_018663_020 Hb_000373_270 Hb_000373_270 Hb_005147_110--Hb_000373_270 Hb_000300_280--Hb_000879_140 Hb_000370_030 Hb_000370_030 Hb_000300_280--Hb_000370_030 Hb_003728_030 Hb_003728_030 Hb_000300_280--Hb_003728_030 Hb_000184_130 Hb_000184_130 Hb_000300_280--Hb_000184_130 Hb_000300_280--Hb_000373_270 Hb_008725_250--Hb_005914_230 Hb_002249_140 Hb_002249_140 Hb_008725_250--Hb_002249_140 Hb_000359_170 Hb_000359_170 Hb_008725_250--Hb_000359_170 Hb_012305_070 Hb_012305_070 Hb_008725_250--Hb_012305_070 Hb_000803_300 Hb_000803_300 Hb_000879_140--Hb_000803_300 Hb_000645_150 Hb_000645_150 Hb_000879_140--Hb_000645_150 Hb_000236_320 Hb_000236_320 Hb_000879_140--Hb_000236_320 Hb_007590_080 Hb_007590_080 Hb_000879_140--Hb_007590_080 Hb_003384_030 Hb_003384_030 Hb_005914_230--Hb_003384_030 Hb_005914_230--Hb_018663_020 Hb_000001_180 Hb_000001_180 Hb_005914_230--Hb_000001_180 Hb_018663_020--Hb_003384_030 Hb_001226_180 Hb_001226_180 Hb_018663_020--Hb_001226_180 Hb_001969_040 Hb_001969_040 Hb_018663_020--Hb_001969_040 Hb_000318_140 Hb_000318_140 Hb_018663_020--Hb_000318_140 Hb_001009_050 Hb_001009_050 Hb_018663_020--Hb_001009_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
154.385 58.1874 25.1157 28.3154 128.722 139.867
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
114.351 50.0036 71.6273 52.3398 16.7595

CAGE analysis