Hb_004310_150

Information

Type -
Description -
Location Contig4310: 135229-136933
Sequence    

Annotation

kegg
ID vvi:100259885
description plasminogen activator inhibitor 1 RNA-binding protein
nr
ID XP_010661405.1
description PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
swissprot
ID -
description -
trembl
ID D7SLZ5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_15s0021g01420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42263: 135147-136481
cDNA
(Sanger)
(ID:Location)		 041_B01.ab1: 135147-136481

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004310_150 0.0 - - PREDICTED: plasminogen activator inhibitor 1 RNA-binding protein [Vitis vinifera]
2 Hb_002518_280 0.056340541 - - phosphate transporter [Manihot esculenta]
3 Hb_000152_380 0.0569354991 - - PREDICTED: hypersensitive-induced response protein 4 [Jatropha curcas]
4 Hb_004032_430 0.0575967826 - - PREDICTED: uncharacterized protein LOC105635169 [Jatropha curcas]
5 Hb_000093_160 0.0602301738 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
6 Hb_120410_010 0.0629894695 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
7 Hb_002477_280 0.0638053852 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM23-2 [Jatropha curcas]
8 Hb_002530_030 0.0665711023 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
9 Hb_003525_010 0.0674163827 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 24-like isoform X1 [Populus euphratica]
10 Hb_007317_110 0.0675042976 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
11 Hb_005276_210 0.0684016365 - - PREDICTED: DNA repair helicase UVH6 isoform X2 [Jatropha curcas]
12 Hb_000038_170 0.0691136951 - - PREDICTED: SCY1-like protein 2 [Jatropha curcas]
13 Hb_008453_140 0.0701479007 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
14 Hb_000085_160 0.0706735923 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
15 Hb_000879_200 0.0714159277 - - PREDICTED: A-kinase anchor protein 17A [Jatropha curcas]
16 Hb_003952_070 0.0717225869 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_003428_030 0.073044846 - - tRNA, putative [Ricinus communis]
18 Hb_002248_080 0.0732696191 - - PREDICTED: probable ubiquitin-conjugating enzyme E2 25 isoform X2 [Jatropha curcas]
19 Hb_010222_050 0.073809239 - - PREDICTED: WD repeat-containing protein 48 isoform X2 [Jatropha curcas]
20 Hb_010068_040 0.0739503954 - - PREDICTED: uncharacterized protein LOC105632964 [Jatropha curcas]

Gene co-expression network

sample Hb_004310_150 Hb_004310_150 Hb_002518_280 Hb_002518_280 Hb_004310_150--Hb_002518_280 Hb_000152_380 Hb_000152_380 Hb_004310_150--Hb_000152_380 Hb_004032_430 Hb_004032_430 Hb_004310_150--Hb_004032_430 Hb_000093_160 Hb_000093_160 Hb_004310_150--Hb_000093_160 Hb_120410_010 Hb_120410_010 Hb_004310_150--Hb_120410_010 Hb_002477_280 Hb_002477_280 Hb_004310_150--Hb_002477_280 Hb_000038_170 Hb_000038_170 Hb_002518_280--Hb_000038_170 Hb_023386_020 Hb_023386_020 Hb_002518_280--Hb_023386_020 Hb_010618_010 Hb_010618_010 Hb_002518_280--Hb_010618_010 Hb_002518_280--Hb_000152_380 Hb_000879_200 Hb_000879_200 Hb_002518_280--Hb_000879_200 Hb_000780_230 Hb_000780_230 Hb_000152_380--Hb_000780_230 Hb_000152_380--Hb_010618_010 Hb_001248_060 Hb_001248_060 Hb_000152_380--Hb_001248_060 Hb_004221_020 Hb_004221_020 Hb_000152_380--Hb_004221_020 Hb_000275_170 Hb_000275_170 Hb_004032_430--Hb_000275_170 Hb_000959_210 Hb_000959_210 Hb_004032_430--Hb_000959_210 Hb_010068_040 Hb_010068_040 Hb_004032_430--Hb_010068_040 Hb_011224_060 Hb_011224_060 Hb_004032_430--Hb_011224_060 Hb_003935_020 Hb_003935_020 Hb_004032_430--Hb_003935_020 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_000120_790 Hb_000120_790 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_004116_060 Hb_004116_060 Hb_120410_010--Hb_004116_060 Hb_001142_030 Hb_001142_030 Hb_120410_010--Hb_001142_030 Hb_002530_030 Hb_002530_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_005276_210 Hb_005276_210 Hb_002477_280--Hb_005276_210 Hb_000085_160 Hb_000085_160 Hb_002477_280--Hb_000085_160 Hb_003952_090 Hb_003952_090 Hb_002477_280--Hb_003952_090 Hb_003525_010 Hb_003525_010 Hb_002477_280--Hb_003525_010 Hb_000300_060 Hb_000300_060 Hb_002477_280--Hb_000300_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
150.121 130.907 108.463 105.585 211.511 206.391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
128.937 205.6 125.844 123.078 85.7223

CAGE analysis