Hb_004314_020

Information

Type -
Description -
Location Contig4314: 93027-95091
Sequence    

Annotation

kegg
ID tcc:TCM_007172
description Auxin-responsive GH3 family protein
nr
ID XP_007042570.1
description Auxin-responsive GH3 family protein [Theobroma cacao]
swissprot
ID O82333
description Probable indole-3-acetic acid-amido synthetase GH3.1 OS=Arabidopsis thaliana GN=GH3.1 PE=2 SV=1
trembl
ID A0A061E230
description Auxin-responsive GH3 family protein OS=Theobroma cacao GN=TCM_007172 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42272: 92850-95043
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004314_020 0.0 - - Auxin-responsive GH3 family protein [Theobroma cacao]
2 Hb_011028_040 0.0748228893 - - receptor serine/threonine kinase, putative [Ricinus communis]
3 Hb_000170_260 0.0867252453 - - amino acid transporter, putative [Ricinus communis]
4 Hb_002849_010 0.0873461302 - - PREDICTED: putative UPF0481 protein At3g02645 [Jatropha curcas]
5 Hb_006873_010 0.0913419335 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
6 Hb_001032_080 0.0983910301 - - Ankyrin repeat protein [Medicago truncatula]
7 Hb_136973_020 0.1161273082 - - -
8 Hb_000248_080 0.1164511638 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
9 Hb_116103_010 0.1200161705 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 5-like [Jatropha curcas]
10 Hb_001333_030 0.1240840669 - - Abscisic acid 8'-hydroxylase 1 [Theobroma cacao]
11 Hb_005928_010 0.1245452961 - - PREDICTED: phospholipase A1-Igamma1, chloroplastic-like [Jatropha curcas]
12 Hb_003847_090 0.1253049563 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
13 Hb_064885_010 0.1255256749 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA4 [Jatropha curcas]
14 Hb_000277_030 0.1290566611 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
15 Hb_000904_110 0.129414529 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Eucalyptus grandis]
16 Hb_137862_020 0.1299107353 - - Leucine-rich repeat receptor protein kinase EXS precursor, putative [Ricinus communis]
17 Hb_009083_020 0.1320137154 - - PREDICTED: thaumatin-like protein 1b [Jatropha curcas]
18 Hb_051408_010 0.133140551 - - calcineurin-like phosphoesterase [Manihot esculenta]
19 Hb_001002_020 0.1349556927 - - ATP binding protein, putative [Ricinus communis]
20 Hb_002540_100 0.1361302876 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At1g66830 [Jatropha curcas]

Gene co-expression network

sample Hb_004314_020 Hb_004314_020 Hb_011028_040 Hb_011028_040 Hb_004314_020--Hb_011028_040 Hb_000170_260 Hb_000170_260 Hb_004314_020--Hb_000170_260 Hb_002849_010 Hb_002849_010 Hb_004314_020--Hb_002849_010 Hb_006873_010 Hb_006873_010 Hb_004314_020--Hb_006873_010 Hb_001032_080 Hb_001032_080 Hb_004314_020--Hb_001032_080 Hb_136973_020 Hb_136973_020 Hb_004314_020--Hb_136973_020 Hb_011028_040--Hb_006873_010 Hb_001333_030 Hb_001333_030 Hb_011028_040--Hb_001333_030 Hb_011028_040--Hb_002849_010 Hb_116103_010 Hb_116103_010 Hb_011028_040--Hb_116103_010 Hb_000904_110 Hb_000904_110 Hb_011028_040--Hb_000904_110 Hb_000170_260--Hb_001032_080 Hb_137862_020 Hb_137862_020 Hb_000170_260--Hb_137862_020 Hb_023712_020 Hb_023712_020 Hb_000170_260--Hb_023712_020 Hb_057721_010 Hb_057721_010 Hb_000170_260--Hb_057721_010 Hb_002163_070 Hb_002163_070 Hb_000170_260--Hb_002163_070 Hb_002849_010--Hb_116103_010 Hb_002849_010--Hb_000904_110 Hb_064885_010 Hb_064885_010 Hb_002849_010--Hb_064885_010 Hb_000628_050 Hb_000628_050 Hb_002849_010--Hb_000628_050 Hb_004316_020 Hb_004316_020 Hb_006873_010--Hb_004316_020 Hb_018563_010 Hb_018563_010 Hb_006873_010--Hb_018563_010 Hb_186995_010 Hb_186995_010 Hb_006873_010--Hb_186995_010 Hb_009252_090 Hb_009252_090 Hb_006873_010--Hb_009252_090 Hb_051408_010 Hb_051408_010 Hb_001032_080--Hb_051408_010 Hb_000227_300 Hb_000227_300 Hb_001032_080--Hb_000227_300 Hb_007426_190 Hb_007426_190 Hb_001032_080--Hb_007426_190 Hb_005694_170 Hb_005694_170 Hb_001032_080--Hb_005694_170 Hb_000248_080 Hb_000248_080 Hb_136973_020--Hb_000248_080 Hb_005928_010 Hb_005928_010 Hb_136973_020--Hb_005928_010 Hb_000277_030 Hb_000277_030 Hb_136973_020--Hb_000277_030 Hb_001002_020 Hb_001002_020 Hb_136973_020--Hb_001002_020 Hb_054165_010 Hb_054165_010 Hb_136973_020--Hb_054165_010 Hb_136973_020--Hb_137862_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 3.9669 7.16084 6.62385 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0765026 0.403527

CAGE analysis