Hb_004316_030

Information

Type -
Description -
Location Contig4316: 7020-20412
Sequence    

Annotation

kegg
ID pop:POPTR_0011s10430g
description hypothetical protein
nr
ID KDP23642.1
description hypothetical protein JCGZ_23475 [Jatropha curcas]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID A0A067JID2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23475 PE=4 SV=1
Gene Ontology
ID GO:0016020
description probable lrr receptor-like serine threonine-protein kinase at3g47570

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004316_030 0.0 - - hypothetical protein JCGZ_23475 [Jatropha curcas]
2 Hb_029977_010 0.1365234147 - - catalytic, putative [Ricinus communis]
3 Hb_001021_030 0.1416685003 - - chloroplast-targeted copper chaperone, putative [Ricinus communis]
4 Hb_000762_070 0.1435721983 transcription factor TF Family: MYB PREDICTED: transcription factor WER-like [Jatropha curcas]
5 Hb_000793_040 0.1509256855 - - PREDICTED: transcription factor LHW [Jatropha curcas]
6 Hb_002928_120 0.1544265572 - - 1,4-alpha-glucan branching enzyme [Manihot esculenta]
7 Hb_002119_070 0.1548407855 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
8 Hb_117168_010 0.1563386362 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
9 Hb_001493_020 0.1571968335 - - leucine-rich repeat receptor-like protein kinase [Manihot esculenta]
10 Hb_003576_050 0.1585510658 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
11 Hb_151706_010 0.1651606219 - - PREDICTED: uncharacterized protein LOC100246093 [Vitis vinifera]
12 Hb_001900_060 0.1708780386 - - PREDICTED: neutral alpha-glucosidase C [Jatropha curcas]
13 Hb_000976_440 0.1714445401 - - UDP-glucosyltransferase, putative [Ricinus communis]
14 Hb_003052_120 0.17417491 - - hypothetical protein POPTR_0008s10970g [Populus trichocarpa]
15 Hb_012807_060 0.1766008373 - - ABC transporter family protein [Hevea brasiliensis]
16 Hb_009823_010 0.1772533617 - - PREDICTED: uncharacterized protein LOC105633096 [Jatropha curcas]
17 Hb_002551_090 0.1774528555 - - hypothetical protein JCGZ_17224 [Jatropha curcas]
18 Hb_000638_090 0.1792396194 - - ABC transporter family protein [Hevea brasiliensis]
19 Hb_002026_080 0.1821312026 desease resistance Gene Name: TIR_2 nucleoside-triphosphatase, putative [Ricinus communis]
20 Hb_001408_050 0.1863692634 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004316_030 Hb_004316_030 Hb_029977_010 Hb_029977_010 Hb_004316_030--Hb_029977_010 Hb_001021_030 Hb_001021_030 Hb_004316_030--Hb_001021_030 Hb_000762_070 Hb_000762_070 Hb_004316_030--Hb_000762_070 Hb_000793_040 Hb_000793_040 Hb_004316_030--Hb_000793_040 Hb_002928_120 Hb_002928_120 Hb_004316_030--Hb_002928_120 Hb_002119_070 Hb_002119_070 Hb_004316_030--Hb_002119_070 Hb_001493_020 Hb_001493_020 Hb_029977_010--Hb_001493_020 Hb_001564_090 Hb_001564_090 Hb_029977_010--Hb_001564_090 Hb_029977_010--Hb_001021_030 Hb_002026_080 Hb_002026_080 Hb_029977_010--Hb_002026_080 Hb_184942_010 Hb_184942_010 Hb_029977_010--Hb_184942_010 Hb_001021_030--Hb_002928_120 Hb_003576_050 Hb_003576_050 Hb_001021_030--Hb_003576_050 Hb_009823_010 Hb_009823_010 Hb_001021_030--Hb_009823_010 Hb_000041_290 Hb_000041_290 Hb_001021_030--Hb_000041_290 Hb_000976_440 Hb_000976_440 Hb_000762_070--Hb_000976_440 Hb_001408_050 Hb_001408_050 Hb_000762_070--Hb_001408_050 Hb_000762_070--Hb_009823_010 Hb_000762_070--Hb_003576_050 Hb_164010_090 Hb_164010_090 Hb_000762_070--Hb_164010_090 Hb_001486_060 Hb_001486_060 Hb_000793_040--Hb_001486_060 Hb_000793_040--Hb_002928_120 Hb_005288_210 Hb_005288_210 Hb_000793_040--Hb_005288_210 Hb_020378_010 Hb_020378_010 Hb_000793_040--Hb_020378_010 Hb_000793_040--Hb_001493_020 Hb_002420_010 Hb_002420_010 Hb_000793_040--Hb_002420_010 Hb_002928_180 Hb_002928_180 Hb_002928_120--Hb_002928_180 Hb_025432_010 Hb_025432_010 Hb_002928_120--Hb_025432_010 Hb_000429_110 Hb_000429_110 Hb_002928_120--Hb_000429_110 Hb_000236_110 Hb_000236_110 Hb_002928_120--Hb_000236_110 Hb_010605_010 Hb_010605_010 Hb_002119_070--Hb_010605_010 Hb_004531_110 Hb_004531_110 Hb_002119_070--Hb_004531_110 Hb_000362_050 Hb_000362_050 Hb_002119_070--Hb_000362_050 Hb_002119_070--Hb_002928_120 Hb_001071_060 Hb_001071_060 Hb_002119_070--Hb_001071_060 Hb_151706_010 Hb_151706_010 Hb_002119_070--Hb_151706_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.016651 0.42282 0.0716536 0.36344 0.0362135 0.102725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0108651 0.0256515 0 0.72136 0.14658

CAGE analysis