Hb_004316_120

Information

Type -
Description -
Location Contig4316: 79928-82132
Sequence    

Annotation

kegg
ID rcu:RCOM_0401100
description hypothetical protein
nr
ID XP_011000986.1
description PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Populus euphratica]
swissprot
ID Q9SU29
description E3 ubiquitin-protein ligase UPL5 OS=Arabidopsis thaliana GN=UPL5 PE=1 SV=1
trembl
ID B9T395
description Putative uncharacterized protein (Fragment) OS=Ricinus communis GN=RCOM_0401100 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004316_120 0.0 - - PREDICTED: E3 ubiquitin-protein ligase UPL5-like isoform X2 [Populus euphratica]
2 Hb_189118_010 0.1201934504 - - PREDICTED: extended synaptotagmin-1 [Cucumis melo]
3 Hb_010710_010 0.1297327624 - - pumilio/Puf RNA-binding domain-containing family protein [Populus trichocarpa]
4 Hb_000977_310 0.1329496595 - - PREDICTED: gamma-tubulin complex component 2 isoform X4 [Jatropha curcas]
5 Hb_001307_140 0.1399689906 - - PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Jatropha curcas]
6 Hb_000386_030 0.1404729074 - - PREDICTED: uncharacterized protein LOC105629270 [Jatropha curcas]
7 Hb_001454_060 0.1410947485 - - uncharacterized protein LOC100527252 [Glycine max]
8 Hb_000173_400 0.1424464708 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18950 [Jatropha curcas]
9 Hb_003494_240 0.1460340026 - - PREDICTED: uncharacterized protein LOC105644075 [Jatropha curcas]
10 Hb_034271_030 0.146050401 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
11 Hb_000413_180 0.1489313845 transcription factor TF Family: GeBP PREDICTED: mediator-associated protein 1-like [Jatropha curcas]
12 Hb_008511_050 0.1496212873 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
13 Hb_012490_040 0.1501238596 - - pre-mRNA cleavage factor im, 25kD subunit, putative [Ricinus communis]
14 Hb_000011_080 0.151039243 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH3-like [Jatropha curcas]
15 Hb_000787_110 0.1522815972 - - eukaryotic translation initiation factor 2 [Hevea brasiliensis]
16 Hb_003750_080 0.1523679689 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
17 Hb_000608_120 0.1532749571 - - PREDICTED: uncharacterized protein LOC105644872 [Jatropha curcas]
18 Hb_000270_020 0.1534954963 - - hypothetical protein POPTR_0015s07630g [Populus trichocarpa]
19 Hb_000703_080 0.1539367638 - - guanine nucleotide exchange factor P532, putative [Ricinus communis]
20 Hb_000575_080 0.1540790799 - - PREDICTED: CD2 antigen cytoplasmic tail-binding protein 2 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004316_120 Hb_004316_120 Hb_189118_010 Hb_189118_010 Hb_004316_120--Hb_189118_010 Hb_010710_010 Hb_010710_010 Hb_004316_120--Hb_010710_010 Hb_000977_310 Hb_000977_310 Hb_004316_120--Hb_000977_310 Hb_001307_140 Hb_001307_140 Hb_004316_120--Hb_001307_140 Hb_000386_030 Hb_000386_030 Hb_004316_120--Hb_000386_030 Hb_001454_060 Hb_001454_060 Hb_004316_120--Hb_001454_060 Hb_000086_590 Hb_000086_590 Hb_189118_010--Hb_000086_590 Hb_189118_010--Hb_010710_010 Hb_005399_010 Hb_005399_010 Hb_189118_010--Hb_005399_010 Hb_034271_030 Hb_034271_030 Hb_189118_010--Hb_034271_030 Hb_049675_010 Hb_049675_010 Hb_189118_010--Hb_049675_010 Hb_000230_080 Hb_000230_080 Hb_189118_010--Hb_000230_080 Hb_010710_010--Hb_000230_080 Hb_000413_180 Hb_000413_180 Hb_010710_010--Hb_000413_180 Hb_003750_080 Hb_003750_080 Hb_010710_010--Hb_003750_080 Hb_002307_100 Hb_002307_100 Hb_010710_010--Hb_002307_100 Hb_000152_820 Hb_000152_820 Hb_010710_010--Hb_000152_820 Hb_001720_050 Hb_001720_050 Hb_010710_010--Hb_001720_050 Hb_001040_160 Hb_001040_160 Hb_000977_310--Hb_001040_160 Hb_050455_010 Hb_050455_010 Hb_000977_310--Hb_050455_010 Hb_000568_040 Hb_000568_040 Hb_000977_310--Hb_000568_040 Hb_010298_010 Hb_010298_010 Hb_000977_310--Hb_010298_010 Hb_110364_010 Hb_110364_010 Hb_000977_310--Hb_110364_010 Hb_000390_060 Hb_000390_060 Hb_000977_310--Hb_000390_060 Hb_001307_140--Hb_110364_010 Hb_063047_010 Hb_063047_010 Hb_001307_140--Hb_063047_010 Hb_001307_140--Hb_001040_160 Hb_001307_140--Hb_000568_040 Hb_000453_270 Hb_000453_270 Hb_001307_140--Hb_000453_270 Hb_001943_010 Hb_001943_010 Hb_001307_140--Hb_001943_010 Hb_001584_160 Hb_001584_160 Hb_000386_030--Hb_001584_160 Hb_000577_010 Hb_000577_010 Hb_000386_030--Hb_000577_010 Hb_001437_180 Hb_001437_180 Hb_000386_030--Hb_001437_180 Hb_000386_030--Hb_010710_010 Hb_000803_190 Hb_000803_190 Hb_000386_030--Hb_000803_190 Hb_000386_030--Hb_000413_180 Hb_003494_240 Hb_003494_240 Hb_001454_060--Hb_003494_240 Hb_000608_120 Hb_000608_120 Hb_001454_060--Hb_000608_120 Hb_000078_130 Hb_000078_130 Hb_001454_060--Hb_000078_130 Hb_000703_080 Hb_000703_080 Hb_001454_060--Hb_000703_080 Hb_000172_400 Hb_000172_400 Hb_001454_060--Hb_000172_400 Hb_001817_180 Hb_001817_180 Hb_001454_060--Hb_001817_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.311337 0.545696 0.0333081 0.182146 0.706823 1.33745
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.662088 0.360504 0.884509 0.241649 0.163842

CAGE analysis