Hb_004316_130

Information

Type -
Description -
Location Contig4316: 83789-92012
Sequence    

Annotation

kegg
ID egr:104431328
description glutathione transferase GST 23-like
nr
ID XP_010042281.1
description PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID K4AY17
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc01g081250.2 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42276: 59081-91885
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004316_130 0.0 - - PREDICTED: glutathione transferase GST 23-like, partial [Eucalyptus grandis]
2 Hb_003893_100 0.0680789244 - - PREDICTED: uncharacterized protein LOC105648774 [Jatropha curcas]
3 Hb_000297_180 0.0849990936 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
4 Hb_144783_010 0.0945901872 - - glutathione s-transferase, putative [Ricinus communis]
5 Hb_000797_030 0.0952263167 - - PREDICTED: leucoanthocyanidin dioxygenase [Jatropha curcas]
6 Hb_003097_200 0.1003769729 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002475_070 0.108774158 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
8 Hb_109673_010 0.1095973072 - - glutathione s-transferase, putative [Ricinus communis]
9 Hb_035583_010 0.1104131374 - - PREDICTED: premnaspirodiene oxygenase-like [Jatropha curcas]
10 Hb_012368_080 0.126539952 - - PREDICTED: uncharacterized protein LOC105126277 [Populus euphratica]
11 Hb_001758_120 0.1344965237 - - unnamed protein product [Vitis vinifera]
12 Hb_018591_010 0.1350104476 - - kinase, putative [Ricinus communis]
13 Hb_006637_040 0.13539244 - - phenylalanine ammonia-lyase 2 [Manihot esculenta]
14 Hb_011145_020 0.1381463324 - - PREDICTED: metalloendoproteinase 1-like [Pyrus x bretschneideri]
15 Hb_164283_010 0.1382140479 - - hypothetical protein RCOM_0725500 [Ricinus communis]
16 Hb_000911_050 0.1417186652 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 21 [Jatropha curcas]
17 Hb_033363_080 0.1417796276 - - Allene oxide cyclase 3, chloroplast precursor, putative [Ricinus communis]
18 Hb_008418_010 0.146138071 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH93-like [Jatropha curcas]
19 Hb_001545_270 0.1461592157 - - laccase, putative [Ricinus communis]
20 Hb_000934_170 0.1491400537 - - alcohol dehydrogenase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004316_130 Hb_004316_130 Hb_003893_100 Hb_003893_100 Hb_004316_130--Hb_003893_100 Hb_000297_180 Hb_000297_180 Hb_004316_130--Hb_000297_180 Hb_144783_010 Hb_144783_010 Hb_004316_130--Hb_144783_010 Hb_000797_030 Hb_000797_030 Hb_004316_130--Hb_000797_030 Hb_003097_200 Hb_003097_200 Hb_004316_130--Hb_003097_200 Hb_002475_070 Hb_002475_070 Hb_004316_130--Hb_002475_070 Hb_003893_100--Hb_000797_030 Hb_003893_100--Hb_003097_200 Hb_012368_080 Hb_012368_080 Hb_003893_100--Hb_012368_080 Hb_003893_100--Hb_000297_180 Hb_006637_040 Hb_006637_040 Hb_003893_100--Hb_006637_040 Hb_000297_180--Hb_012368_080 Hb_000297_180--Hb_144783_010 Hb_035583_010 Hb_035583_010 Hb_000297_180--Hb_035583_010 Hb_000297_180--Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_000200_180 Hb_000200_180 Hb_144783_010--Hb_000200_180 Hb_002521_010 Hb_002521_010 Hb_144783_010--Hb_002521_010 Hb_144783_010--Hb_003893_100 Hb_000797_030--Hb_003097_200 Hb_000911_050 Hb_000911_050 Hb_000797_030--Hb_000911_050 Hb_000797_030--Hb_006637_040 Hb_001758_120 Hb_001758_120 Hb_000797_030--Hb_001758_120 Hb_003097_200--Hb_000911_050 Hb_003097_200--Hb_006637_040 Hb_003097_200--Hb_001758_120 Hb_002475_070--Hb_003893_100 Hb_002475_070--Hb_000797_030 Hb_002475_070--Hb_002521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0318308 0.242499 0.860826 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.90565 0.323773

CAGE analysis