Hb_004317_010

Information

Type -
Description -
Location Contig4317: 9281-18643
Sequence    

Annotation

kegg
ID mdm:103445018
description uncharacterized LOC103445018
nr
ID XP_006430071.1
description hypothetical protein CICLE_v10011038mg [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4T1D8
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10011038mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004317_010 0.0 - - hypothetical protein CICLE_v10011038mg [Citrus clementina]
2 Hb_001105_130 0.1177122282 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
3 Hb_000540_100 0.1328085963 - - PREDICTED: BTB/POZ domain-containing protein At5g60050 [Jatropha curcas]
4 Hb_002301_030 0.1365958308 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
5 Hb_000062_530 0.1439715575 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]
6 Hb_010407_030 0.1482246197 - - PREDICTED: casein kinase I-like [Jatropha curcas]
7 Hb_124315_010 0.1493821248 - - PREDICTED: uncharacterized protein LOC105650413 [Jatropha curcas]
8 Hb_003581_130 0.152132175 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
9 Hb_034507_060 0.1527020698 - - PREDICTED: UPF0503 protein At3g09070, chloroplastic-like [Citrus sinensis]
10 Hb_000320_350 0.152802998 - - hypothetical protein RCOM_0904330 [Ricinus communis]
11 Hb_007537_030 0.1542352558 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
12 Hb_027380_150 0.1543704053 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002968_030 0.1546022242 - - Pectinesterase-1 precursor, putative [Ricinus communis]
14 Hb_000342_170 0.1559753499 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
15 Hb_000683_050 0.1561077281 - - PREDICTED: probable carbohydrate esterase At4g34215 [Jatropha curcas]
16 Hb_001235_130 0.1563479166 - - -
17 Hb_000340_220 0.1577962782 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000570_020 0.1578549325 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
19 Hb_002311_130 0.1587701362 - - PREDICTED: importin subunit alpha-2 isoform X2 [Jatropha curcas]
20 Hb_002805_090 0.1592740544 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004317_010 Hb_004317_010 Hb_001105_130 Hb_001105_130 Hb_004317_010--Hb_001105_130 Hb_000540_100 Hb_000540_100 Hb_004317_010--Hb_000540_100 Hb_002301_030 Hb_002301_030 Hb_004317_010--Hb_002301_030 Hb_000062_530 Hb_000062_530 Hb_004317_010--Hb_000062_530 Hb_010407_030 Hb_010407_030 Hb_004317_010--Hb_010407_030 Hb_124315_010 Hb_124315_010 Hb_004317_010--Hb_124315_010 Hb_002805_090 Hb_002805_090 Hb_001105_130--Hb_002805_090 Hb_011310_050 Hb_011310_050 Hb_001105_130--Hb_011310_050 Hb_000679_040 Hb_000679_040 Hb_001105_130--Hb_000679_040 Hb_010381_020 Hb_010381_020 Hb_001105_130--Hb_010381_020 Hb_004326_010 Hb_004326_010 Hb_001105_130--Hb_004326_010 Hb_000120_740 Hb_000120_740 Hb_001105_130--Hb_000120_740 Hb_001366_270 Hb_001366_270 Hb_000540_100--Hb_001366_270 Hb_004030_060 Hb_004030_060 Hb_000540_100--Hb_004030_060 Hb_002311_130 Hb_002311_130 Hb_000540_100--Hb_002311_130 Hb_001702_050 Hb_001702_050 Hb_000540_100--Hb_001702_050 Hb_001235_130 Hb_001235_130 Hb_000540_100--Hb_001235_130 Hb_001811_170 Hb_001811_170 Hb_000540_100--Hb_001811_170 Hb_000510_150 Hb_000510_150 Hb_002301_030--Hb_000510_150 Hb_001246_130 Hb_001246_130 Hb_002301_030--Hb_001246_130 Hb_002687_200 Hb_002687_200 Hb_002301_030--Hb_002687_200 Hb_000027_200 Hb_000027_200 Hb_002301_030--Hb_000027_200 Hb_000665_170 Hb_000665_170 Hb_002301_030--Hb_000665_170 Hb_002808_020 Hb_002808_020 Hb_002301_030--Hb_002808_020 Hb_003710_020 Hb_003710_020 Hb_000062_530--Hb_003710_020 Hb_001545_130 Hb_001545_130 Hb_000062_530--Hb_001545_130 Hb_004109_050 Hb_004109_050 Hb_000062_530--Hb_004109_050 Hb_000152_710 Hb_000152_710 Hb_000062_530--Hb_000152_710 Hb_019280_020 Hb_019280_020 Hb_000062_530--Hb_019280_020 Hb_012362_030 Hb_012362_030 Hb_000062_530--Hb_012362_030 Hb_006949_060 Hb_006949_060 Hb_010407_030--Hb_006949_060 Hb_010407_030--Hb_010381_020 Hb_002739_120 Hb_002739_120 Hb_010407_030--Hb_002739_120 Hb_001009_150 Hb_001009_150 Hb_010407_030--Hb_001009_150 Hb_005854_040 Hb_005854_040 Hb_010407_030--Hb_005854_040 Hb_009078_020 Hb_009078_020 Hb_010407_030--Hb_009078_020 Hb_007229_050 Hb_007229_050 Hb_124315_010--Hb_007229_050 Hb_006185_030 Hb_006185_030 Hb_124315_010--Hb_006185_030 Hb_000172_280 Hb_000172_280 Hb_124315_010--Hb_000172_280 Hb_004883_020 Hb_004883_020 Hb_124315_010--Hb_004883_020 Hb_000683_050 Hb_000683_050 Hb_124315_010--Hb_000683_050 Hb_000861_100 Hb_000861_100 Hb_124315_010--Hb_000861_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.301926 0.625184 0.63777 1.21115 0.0143465 0.285957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.069857 0.192344 0.205689 0.724911 0.801336

CAGE analysis