Hb_004317_020

Information

Type -
Description -
Location Contig4317: 19192-19389
Sequence    

Annotation

kegg
ID mdm:103443320
description protein CHROMOSOME TRANSMISSION FIDELITY 7-like
nr
ID XP_008380357.1
description PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0000280
description protein chromosome transmission fidelity 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004317_020 0.0 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7-like [Malus domestica]
2 Hb_000566_060 0.0160959086 - - conserved hypothetical protein [Ricinus communis]
3 Hb_034858_010 0.0372198647 - - -
4 Hb_010068_010 0.0605292289 - - PREDICTED: uncharacterized protein LOC105633273 [Jatropha curcas]
5 Hb_000926_240 0.0652148116 - - hypothetical protein PRUPE_ppb018041mg [Prunus persica]
6 Hb_160479_010 0.0806230461 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
7 Hb_051900_020 0.0814154001 - - JHL22C18.7 [Jatropha curcas]
8 Hb_000740_140 0.0895976639 transcription factor TF Family: OFP PREDICTED: probable transcription repressor OFP9 [Jatropha curcas]
9 Hb_005348_020 0.0989803975 - - conserved hypothetical protein [Ricinus communis]
10 Hb_033691_010 0.112499743 - - Lignin-forming anionic peroxidase precursor, putative [Ricinus communis]
11 Hb_002235_330 0.1154354589 - - PREDICTED: expansin-A1 isoform X1 [Jatropha curcas]
12 Hb_004102_150 0.1227312189 - - Late embryogenesis abundant protein D-7, putative [Ricinus communis]
13 Hb_000935_060 0.1228785763 - - PREDICTED: 1-aminocyclopropane-1-carboxylate synthase 8-like [Jatropha curcas]
14 Hb_000622_140 0.1241281776 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000269_050 0.1256110252 - - PREDICTED: beta-glucosidase 12-like [Gossypium raimondii]
16 Hb_002028_250 0.1319960627 - - Alpha-aminoadipic semialdehyde synthase, mitochondrial [Crassostrea gigas]
17 Hb_000375_210 0.1379585801 - - -
18 Hb_000270_590 0.1423664736 - - hypothetical protein POPTR_0012s07820g [Populus trichocarpa]
19 Hb_000381_140 0.1434687081 - - PREDICTED: S-type anion channel SLAH4-like [Jatropha curcas]
20 Hb_000325_090 0.1441960584 transcription factor TF Family: bHLH PREDICTED: transcription factor PRE5-like [Gossypium raimondii]

Gene co-expression network

sample Hb_004317_020 Hb_004317_020 Hb_000566_060 Hb_000566_060 Hb_004317_020--Hb_000566_060 Hb_034858_010 Hb_034858_010 Hb_004317_020--Hb_034858_010 Hb_010068_010 Hb_010068_010 Hb_004317_020--Hb_010068_010 Hb_000926_240 Hb_000926_240 Hb_004317_020--Hb_000926_240 Hb_160479_010 Hb_160479_010 Hb_004317_020--Hb_160479_010 Hb_051900_020 Hb_051900_020 Hb_004317_020--Hb_051900_020 Hb_000566_060--Hb_034858_010 Hb_000566_060--Hb_010068_010 Hb_000566_060--Hb_051900_020 Hb_000566_060--Hb_000926_240 Hb_000566_060--Hb_160479_010 Hb_000740_140 Hb_000740_140 Hb_034858_010--Hb_000740_140 Hb_005348_020 Hb_005348_020 Hb_034858_010--Hb_005348_020 Hb_034858_010--Hb_000926_240 Hb_034858_010--Hb_010068_010 Hb_010068_010--Hb_160479_010 Hb_010068_010--Hb_000926_240 Hb_033691_010 Hb_033691_010 Hb_010068_010--Hb_033691_010 Hb_010068_010--Hb_051900_020 Hb_000926_240--Hb_160479_010 Hb_000935_060 Hb_000935_060 Hb_000926_240--Hb_000935_060 Hb_004102_150 Hb_004102_150 Hb_000926_240--Hb_004102_150 Hb_160479_010--Hb_033691_010 Hb_160479_010--Hb_051900_020 Hb_160479_010--Hb_000935_060 Hb_051900_020--Hb_033691_010 Hb_002235_330 Hb_002235_330 Hb_051900_020--Hb_002235_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 8.22128 95.315 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 4.58601 0

CAGE analysis