Hb_004317_030

Information

Type -
Description -
Location Contig4317: 23192-25767
Sequence    

Annotation

kegg
ID rcu:RCOM_0437770
description hypothetical protein
nr
ID XP_012074329.1
description PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
swissprot
ID A7UL74
description Protein CHROMOSOME TRANSMISSION FIDELITY 7 OS=Arabidopsis thaliana GN=CTF7 PE=1 SV=1
trembl
ID A0A067KIR4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08765 PE=4 SV=1
Gene Ontology
ID GO:0016740
description protein chromosome transmission fidelity 7-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 004_H21r.ab1: 25496-29745

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004317_030 0.0 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
2 Hb_000032_370 0.0490067593 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
3 Hb_000510_030 0.0766768749 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
4 Hb_000392_550 0.0905120622 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_002045_060 0.1052492287 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
6 Hb_001369_790 0.1083749514 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
7 Hb_007894_050 0.1158883721 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
8 Hb_000428_060 0.1159802598 - - malate dehydrogenase, putative [Ricinus communis]
9 Hb_027298_010 0.1214897265 - - conserved hypothetical protein [Ricinus communis]
10 Hb_065525_120 0.1230835356 - - dtdp-glucose 4-6-dehydratase, putative [Ricinus communis]
11 Hb_010422_070 0.1238396858 - - PREDICTED: UPF0483 protein CBG03338-like [Jatropha curcas]
12 Hb_001711_120 0.1238843852 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
13 Hb_000457_290 0.1255755503 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
14 Hb_000394_180 0.1259287401 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
15 Hb_001301_340 0.1278592323 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
16 Hb_012244_010 0.127958908 - - PREDICTED: uncharacterized protein LOC105641034 [Jatropha curcas]
17 Hb_000012_110 0.1280150947 - - hypothetical protein CICLE_v10008613mg [Citrus clementina]
18 Hb_027298_030 0.130974789 - - PREDICTED: histone H1-like [Jatropha curcas]
19 Hb_002876_020 0.1311902049 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
20 Hb_004128_070 0.1318205129 - - PREDICTED: thioredoxin-like protein AAED1, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_004317_030 Hb_004317_030 Hb_000032_370 Hb_000032_370 Hb_004317_030--Hb_000032_370 Hb_000510_030 Hb_000510_030 Hb_004317_030--Hb_000510_030 Hb_000392_550 Hb_000392_550 Hb_004317_030--Hb_000392_550 Hb_002045_060 Hb_002045_060 Hb_004317_030--Hb_002045_060 Hb_001369_790 Hb_001369_790 Hb_004317_030--Hb_001369_790 Hb_007894_050 Hb_007894_050 Hb_004317_030--Hb_007894_050 Hb_000032_370--Hb_000392_550 Hb_065525_120 Hb_065525_120 Hb_000032_370--Hb_065525_120 Hb_000032_370--Hb_002045_060 Hb_000032_370--Hb_000510_030 Hb_000428_060 Hb_000428_060 Hb_000032_370--Hb_000428_060 Hb_000510_030--Hb_000392_550 Hb_000510_030--Hb_001369_790 Hb_001711_120 Hb_001711_120 Hb_000510_030--Hb_001711_120 Hb_004440_060 Hb_004440_060 Hb_000510_030--Hb_004440_060 Hb_000392_550--Hb_001369_790 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_005276_040 Hb_005276_040 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_004123_020 Hb_004123_020 Hb_002045_060--Hb_004123_020 Hb_002045_060--Hb_000428_060 Hb_007192_030 Hb_007192_030 Hb_001369_790--Hb_007192_030 Hb_001369_790--Hb_004440_060 Hb_000086_080 Hb_000086_080 Hb_001369_790--Hb_000086_080 Hb_000394_180 Hb_000394_180 Hb_001369_790--Hb_000394_180 Hb_000622_290 Hb_000622_290 Hb_001369_790--Hb_000622_290 Hb_001073_080 Hb_001073_080 Hb_007894_050--Hb_001073_080 Hb_001301_340 Hb_001301_340 Hb_007894_050--Hb_001301_340 Hb_003126_130 Hb_003126_130 Hb_007894_050--Hb_003126_130 Hb_002872_050 Hb_002872_050 Hb_007894_050--Hb_002872_050 Hb_007894_050--Hb_000392_550 Hb_001377_450 Hb_001377_450 Hb_007894_050--Hb_001377_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206239 0.0928587 0.720508 0.75077 0.0580048 0.107701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.566487 0.853997 0.480143 0.492093 0.991386

CAGE analysis