Hb_004317_040

Information

Type -
Description -
Location Contig4317: 25445-29745
Sequence    

Annotation

kegg
ID rcu:RCOM_0437760
description (Di)nucleoside polyphosphate hydrolase, putative
nr
ID XP_006381951.1
description hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
swissprot
ID Q9FNH4
description Nudix hydrolase 27, chloroplastic OS=Arabidopsis thaliana GN=NUDT27 PE=1 SV=1
trembl
ID U5G882
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s22010g PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42277: 25415-29745 , PASA_asmbl_42278: 28364-29617 , PASA_asmbl_42279: 29250-29551
cDNA
(Sanger)
(ID:Location)		 004_H21.ab1: 25496-29745 , 006_O15.ab1: 28446-29617

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004317_040 0.0 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
2 Hb_000483_410 0.0783283213 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic [Jatropha curcas]
3 Hb_001080_080 0.0862573031 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
4 Hb_029584_060 0.0958013573 - - Grave disease carrier protein, putative [Ricinus communis]
5 Hb_011781_030 0.0976264133 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
6 Hb_002830_020 0.0985486902 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_000317_340 0.1001589699 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000877_020 0.1014933109 - - PREDICTED: F-box/LRR-repeat protein 4 [Jatropha curcas]
9 Hb_004108_230 0.1017957884 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
10 Hb_143629_230 0.1029519349 - - ring finger, putative [Ricinus communis]
11 Hb_000120_760 0.1032859362 transcription factor TF Family: HMG PREDICTED: HMG1/2-like protein [Populus euphratica]
12 Hb_003927_130 0.1033998487 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
13 Hb_000086_070 0.1047850448 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
14 Hb_094608_010 0.1067333354 - - PREDICTED: uncharacterized protein LOC105630444 isoform X3 [Jatropha curcas]
15 Hb_005432_030 0.109908722 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
16 Hb_000120_750 0.1103061259 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
17 Hb_032202_090 0.1112852425 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
18 Hb_003455_040 0.111338901 - - hypothetical protein JCGZ_17270 [Jatropha curcas]
19 Hb_000840_030 0.1114883663 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
20 Hb_000545_150 0.1132024945 - - PREDICTED: transcription factor BTF3 homolog 4-like [Malus domestica]

Gene co-expression network

sample Hb_004317_040 Hb_004317_040 Hb_000483_410 Hb_000483_410 Hb_004317_040--Hb_000483_410 Hb_001080_080 Hb_001080_080 Hb_004317_040--Hb_001080_080 Hb_029584_060 Hb_029584_060 Hb_004317_040--Hb_029584_060 Hb_011781_030 Hb_011781_030 Hb_004317_040--Hb_011781_030 Hb_002830_020 Hb_002830_020 Hb_004317_040--Hb_002830_020 Hb_000317_340 Hb_000317_340 Hb_004317_040--Hb_000317_340 Hb_000483_410--Hb_011781_030 Hb_000877_020 Hb_000877_020 Hb_000483_410--Hb_000877_020 Hb_000680_140 Hb_000680_140 Hb_000483_410--Hb_000680_140 Hb_004108_230 Hb_004108_230 Hb_000483_410--Hb_004108_230 Hb_094608_010 Hb_094608_010 Hb_000483_410--Hb_094608_010 Hb_144598_020 Hb_144598_020 Hb_001080_080--Hb_144598_020 Hb_000221_150 Hb_000221_150 Hb_001080_080--Hb_000221_150 Hb_007416_020 Hb_007416_020 Hb_001080_080--Hb_007416_020 Hb_000028_400 Hb_000028_400 Hb_001080_080--Hb_000028_400 Hb_001045_080 Hb_001045_080 Hb_001080_080--Hb_001045_080 Hb_001080_080--Hb_029584_060 Hb_002431_050 Hb_002431_050 Hb_029584_060--Hb_002431_050 Hb_029584_060--Hb_002830_020 Hb_000120_750 Hb_000120_750 Hb_029584_060--Hb_000120_750 Hb_000201_120 Hb_000201_120 Hb_029584_060--Hb_000201_120 Hb_029584_060--Hb_007416_020 Hb_018133_060 Hb_018133_060 Hb_011781_030--Hb_018133_060 Hb_143629_230 Hb_143629_230 Hb_011781_030--Hb_143629_230 Hb_000840_030 Hb_000840_030 Hb_011781_030--Hb_000840_030 Hb_000340_140 Hb_000340_140 Hb_011781_030--Hb_000340_140 Hb_011781_030--Hb_000317_340 Hb_002830_020--Hb_002431_050 Hb_012022_120 Hb_012022_120 Hb_002830_020--Hb_012022_120 Hb_002864_050 Hb_002864_050 Hb_002830_020--Hb_002864_050 Hb_002830_020--Hb_000201_120 Hb_002830_020--Hb_094608_010 Hb_003581_150 Hb_003581_150 Hb_002830_020--Hb_003581_150 Hb_032202_090 Hb_032202_090 Hb_000317_340--Hb_032202_090 Hb_000317_340--Hb_143629_230 Hb_000365_380 Hb_000365_380 Hb_000317_340--Hb_000365_380 Hb_000545_150 Hb_000545_150 Hb_000317_340--Hb_000545_150 Hb_000465_060 Hb_000465_060 Hb_000317_340--Hb_000465_060 Hb_000317_340--Hb_000120_750
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.8306 2.65117 8.32391 5.47897 9.268 17.391
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.3809 28.6618 16.9233 2.7891 7.05058

CAGE analysis