Hb_004317_050

Information

Type -
Description -
Location Contig4317: 31576-31932
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID A0A0A9L819
description AY110266 OS=Arundo donax PE=4 SV=1
Gene Ontology
ID GO:0005634
description protein chromosome transmission fidelity 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004317_050 0.0 - - -
2 Hb_057746_010 0.1677043078 - - -
3 Hb_002490_040 0.1749135052 - - 20S proteasome beta subunit C2 [Hevea brasiliensis]
4 Hb_004429_040 0.1873814841 - - -
5 Hb_000563_290 0.187706302 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
6 Hb_000195_050 0.1964815713 - - -
7 Hb_001241_060 0.2003443095 - - -
8 Hb_038675_010 0.2125214443 - - PREDICTED: uncharacterized protein LOC105155307, partial [Sesamum indicum]
9 Hb_059069_010 0.2130644171 - - PREDICTED: uncharacterized protein LOC105180180, partial [Sesamum indicum]
10 Hb_011360_100 0.221633162 - - -
11 Hb_001385_050 0.2251800982 - - catalytic, putative [Ricinus communis]
12 Hb_004458_050 0.2294388502 - - -
13 Hb_005741_010 0.2322056198 - - PREDICTED: uncharacterized protein LOC105775353 [Gossypium raimondii]
14 Hb_010024_010 0.2370832247 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_105484_010 0.2392386557 - - carbohydrate-binding-like fold protein, partial [Manihot esculenta]
16 Hb_012194_010 0.2398177674 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
17 Hb_000962_010 0.2424740887 - - -
18 Hb_022593_060 0.2443610192 - - -
19 Hb_000831_040 0.2471234246 - - -
20 Hb_006275_030 0.2540747939 - - -

Gene co-expression network

sample Hb_004317_050 Hb_004317_050 Hb_057746_010 Hb_057746_010 Hb_004317_050--Hb_057746_010 Hb_002490_040 Hb_002490_040 Hb_004317_050--Hb_002490_040 Hb_004429_040 Hb_004429_040 Hb_004317_050--Hb_004429_040 Hb_000563_290 Hb_000563_290 Hb_004317_050--Hb_000563_290 Hb_000195_050 Hb_000195_050 Hb_004317_050--Hb_000195_050 Hb_001241_060 Hb_001241_060 Hb_004317_050--Hb_001241_060 Hb_165078_010 Hb_165078_010 Hb_057746_010--Hb_165078_010 Hb_057746_010--Hb_002490_040 Hb_057746_010--Hb_000563_290 Hb_057746_010--Hb_000195_050 Hb_038675_010 Hb_038675_010 Hb_057746_010--Hb_038675_010 Hb_002490_040--Hb_004429_040 Hb_002490_040--Hb_000563_290 Hb_002490_040--Hb_001241_060 Hb_002490_040--Hb_000195_050 Hb_002490_040--Hb_038675_010 Hb_059069_010 Hb_059069_010 Hb_002490_040--Hb_059069_010 Hb_004429_040--Hb_001241_060 Hb_004429_040--Hb_000563_290 Hb_004429_040--Hb_000195_050 Hb_010024_010 Hb_010024_010 Hb_004429_040--Hb_010024_010 Hb_022593_060 Hb_022593_060 Hb_004429_040--Hb_022593_060 Hb_000563_290--Hb_000195_050 Hb_000563_290--Hb_038675_010 Hb_000563_290--Hb_059069_010 Hb_011360_100 Hb_011360_100 Hb_000563_290--Hb_011360_100 Hb_000195_050--Hb_038675_010 Hb_000195_050--Hb_059069_010 Hb_000195_050--Hb_011360_100 Hb_004458_050 Hb_004458_050 Hb_000195_050--Hb_004458_050 Hb_005741_010 Hb_005741_010 Hb_000195_050--Hb_005741_010 Hb_001241_060--Hb_010024_010 Hb_001241_060--Hb_022593_060 Hb_001241_060--Hb_000563_290 Hb_001206_070 Hb_001206_070 Hb_001241_060--Hb_001206_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
100.833 24.0145 0 0 5.34166 378.617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 4.84013 0 0 0

CAGE analysis