Hb_004317_060

Information

Type -
Description -
Location Contig4317: 41571-56489
Sequence    

Annotation

kegg
ID rcu:RCOM_0437780
description hypothetical protein
nr
ID XP_012074328.1
description PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
swissprot
ID Q3URQ0
description Testis-expressed sequence 10 protein OS=Mus musculus GN=Tex10 PE=1 SV=1
trembl
ID A0A067KV24
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08764 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42281: 41637-45424 , PASA_asmbl_42282: 47114-47954 , PASA_asmbl_42283: 48678-48825
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004317_060 0.0 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
2 Hb_002414_060 0.0879056184 - - hypothetical protein EUGRSUZ_E01310 [Eucalyptus grandis]
3 Hb_000270_390 0.0950137155 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
4 Hb_001437_190 0.0970454494 - - ABC transporter family protein [Hevea brasiliensis]
5 Hb_084670_010 0.0973201979 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_007558_100 0.0980895833 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
7 Hb_000237_040 0.0982463966 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
8 Hb_001662_100 0.1034611119 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
9 Hb_055062_040 0.1046892025 - - ceramidase, putative [Ricinus communis]
10 Hb_003544_160 0.1073420935 - - -
11 Hb_143629_130 0.1077507988 - - unnamed protein product [Coffea canephora]
12 Hb_179306_020 0.1078712343 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
13 Hb_027445_020 0.1105302311 - - PREDICTED: glycosylphosphatidylinositol anchor attachment 1 protein [Jatropha curcas]
14 Hb_004677_050 0.1105559285 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
15 Hb_000429_150 0.1112304123 - - hypothetical protein JCGZ_06799 [Jatropha curcas]
16 Hb_003544_050 0.1115084725 - - PREDICTED: uncharacterized protein LOC105644300 isoform X1 [Jatropha curcas]
17 Hb_000803_320 0.1116767662 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]
18 Hb_003055_040 0.1138974621 - - PREDICTED: secretory carrier-associated membrane protein 3-like isoform X1 [Jatropha curcas]
19 Hb_000358_050 0.1139416615 - - PREDICTED: uncharacterized protein LOC105633378 [Jatropha curcas]
20 Hb_122968_010 0.114578345 - - hypothetical protein JCGZ_23576 [Jatropha curcas]

Gene co-expression network

sample Hb_004317_060 Hb_004317_060 Hb_002414_060 Hb_002414_060 Hb_004317_060--Hb_002414_060 Hb_000270_390 Hb_000270_390 Hb_004317_060--Hb_000270_390 Hb_001437_190 Hb_001437_190 Hb_004317_060--Hb_001437_190 Hb_084670_010 Hb_084670_010 Hb_004317_060--Hb_084670_010 Hb_007558_100 Hb_007558_100 Hb_004317_060--Hb_007558_100 Hb_000237_040 Hb_000237_040 Hb_004317_060--Hb_000237_040 Hb_000429_150 Hb_000429_150 Hb_002414_060--Hb_000429_150 Hb_143629_130 Hb_143629_130 Hb_002414_060--Hb_143629_130 Hb_002414_060--Hb_007558_100 Hb_138475_010 Hb_138475_010 Hb_002414_060--Hb_138475_010 Hb_000140_280 Hb_000140_280 Hb_002414_060--Hb_000140_280 Hb_000803_320 Hb_000803_320 Hb_000270_390--Hb_000803_320 Hb_002768_060 Hb_002768_060 Hb_000270_390--Hb_002768_060 Hb_003544_160 Hb_003544_160 Hb_000270_390--Hb_003544_160 Hb_002874_110 Hb_002874_110 Hb_000270_390--Hb_002874_110 Hb_000789_200 Hb_000789_200 Hb_000270_390--Hb_000789_200 Hb_002284_250 Hb_002284_250 Hb_001437_190--Hb_002284_250 Hb_000237_050 Hb_000237_050 Hb_001437_190--Hb_000237_050 Hb_001437_190--Hb_000237_040 Hb_001195_470 Hb_001195_470 Hb_001437_190--Hb_001195_470 Hb_000062_020 Hb_000062_020 Hb_001437_190--Hb_000062_020 Hb_001821_150 Hb_001821_150 Hb_001437_190--Hb_001821_150 Hb_055062_040 Hb_055062_040 Hb_084670_010--Hb_055062_040 Hb_000358_050 Hb_000358_050 Hb_084670_010--Hb_000358_050 Hb_011537_060 Hb_011537_060 Hb_084670_010--Hb_011537_060 Hb_001159_010 Hb_001159_010 Hb_084670_010--Hb_001159_010 Hb_084670_010--Hb_007558_100 Hb_016347_010 Hb_016347_010 Hb_084670_010--Hb_016347_010 Hb_007558_100--Hb_000429_150 Hb_012678_020 Hb_012678_020 Hb_007558_100--Hb_012678_020 Hb_002686_310 Hb_002686_310 Hb_007558_100--Hb_002686_310 Hb_007558_100--Hb_055062_040 Hb_000976_100 Hb_000976_100 Hb_000237_040--Hb_000976_100 Hb_027445_020 Hb_027445_020 Hb_000237_040--Hb_027445_020 Hb_126976_010 Hb_126976_010 Hb_000237_040--Hb_126976_010 Hb_001369_360 Hb_001369_360 Hb_000237_040--Hb_001369_360 Hb_000237_040--Hb_000237_050 Hb_000237_040--Hb_055062_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.251122 0.827553 0.490851 1.42245 0.472061 1.2152
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.614089 0.58482 0.477166 1.30982 1.43443

CAGE analysis