Hb_004321_010

Information

Type -
Description -
Location Contig4321: 37991-42518
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_007044250.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004321_010 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_008147_010 0.1263360448 - - hypothetical protein, partial [Pseudomonas fluorescens]
3 Hb_005078_030 0.2771666193 - - -
4 Hb_004757_030 0.2772539827 - - -
5 Hb_002357_050 0.2772611688 - - -
6 Hb_001930_020 0.2811016682 - - PREDICTED: pectinesterase QRT1 [Jatropha curcas]
7 Hb_005357_090 0.2819027751 - - ubiquitin, putative [Ricinus communis]
8 Hb_135624_010 0.2832928408 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
9 Hb_124518_010 0.2882662148 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
10 Hb_003752_050 0.2886970437 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
11 Hb_001318_090 0.2918142853 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
12 Hb_012725_080 0.2922515569 - - -
13 Hb_001009_130 0.2947734205 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
14 Hb_003540_130 0.2976188059 - - -
15 Hb_000735_150 0.3010367002 - - hypothetical protein JCGZ_15322 [Jatropha curcas]
16 Hb_005396_160 0.3013443625 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
17 Hb_019654_080 0.3152113467 - - -
18 Hb_012363_010 0.3271944703 - - -
19 Hb_062244_010 0.3340081704 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_052983_010 0.3356218672 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]

Gene co-expression network

sample Hb_004321_010 Hb_004321_010 Hb_008147_010 Hb_008147_010 Hb_004321_010--Hb_008147_010 Hb_005078_030 Hb_005078_030 Hb_004321_010--Hb_005078_030 Hb_004757_030 Hb_004757_030 Hb_004321_010--Hb_004757_030 Hb_002357_050 Hb_002357_050 Hb_004321_010--Hb_002357_050 Hb_001930_020 Hb_001930_020 Hb_004321_010--Hb_001930_020 Hb_005357_090 Hb_005357_090 Hb_004321_010--Hb_005357_090 Hb_135624_010 Hb_135624_010 Hb_008147_010--Hb_135624_010 Hb_001009_130 Hb_001009_130 Hb_008147_010--Hb_001009_130 Hb_006344_010 Hb_006344_010 Hb_008147_010--Hb_006344_010 Hb_003540_130 Hb_003540_130 Hb_008147_010--Hb_003540_130 Hb_001021_060 Hb_001021_060 Hb_008147_010--Hb_001021_060 Hb_005078_030--Hb_004757_030 Hb_005078_030--Hb_002357_050 Hb_005078_030--Hb_001930_020 Hb_005078_030--Hb_005357_090 Hb_001318_090 Hb_001318_090 Hb_005078_030--Hb_001318_090 Hb_012725_080 Hb_012725_080 Hb_005078_030--Hb_012725_080 Hb_004757_030--Hb_002357_050 Hb_004757_030--Hb_001930_020 Hb_004757_030--Hb_005357_090 Hb_004757_030--Hb_001318_090 Hb_004757_030--Hb_012725_080 Hb_002357_050--Hb_001930_020 Hb_002357_050--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_002357_050--Hb_124518_010 Hb_000735_150 Hb_000735_150 Hb_002357_050--Hb_000735_150 Hb_001930_020--Hb_005357_090 Hb_001930_020--Hb_124518_010 Hb_001930_020--Hb_000735_150 Hb_005357_090--Hb_124518_010 Hb_005357_090--Hb_000735_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0109878 0 0 0 0 0.00504627
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0187854 0 0

CAGE analysis