Hb_004324_030

Information

Type -
Description -
Location Contig4324: 16223-18311
Sequence    

Annotation

kegg
ID rcu:RCOM_1579770
description protein phosphatase 2c, putative (EC:3.1.3.16)
nr
ID XP_012090097.1
description PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
swissprot
ID Q5SN75
description Probable protein phosphatase 2C 8 OS=Oryza sativa subsp. japonica GN=Os01g0656200 PE=2 SV=1
trembl
ID A0A067JH80
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25989 PE=3 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 51

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42302: 16246-18393
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_030 0.0 - - PREDICTED: probable protein phosphatase 2C 8 [Jatropha curcas]
2 Hb_002739_040 0.1008697129 - - PREDICTED: isocitrate dehydrogenase [NADP] [Jatropha curcas]
3 Hb_042509_020 0.1028647763 - - hypothetical protein JCGZ_19555 [Jatropha curcas]
4 Hb_026549_050 0.1055529885 - - PREDICTED: uncharacterized protein LOC105636246 isoform X2 [Jatropha curcas]
5 Hb_000003_020 0.1088578639 - - PREDICTED: uncharacterized protein LOC105631161 [Jatropha curcas]
6 Hb_000181_210 0.1092843001 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
7 Hb_000216_050 0.1162072223 - - PREDICTED: indole-3-acetaldehyde oxidase-like [Jatropha curcas]
8 Hb_001159_170 0.1228391663 - - PREDICTED: AT-hook motif nuclear-localized protein 1 [Jatropha curcas]
9 Hb_000832_280 0.126784184 - - PREDICTED: aquaporin TIP1-3 [Jatropha curcas]
10 Hb_000834_040 0.1297257969 - - PREDICTED: ras-related protein Rab7 [Cucumis melo]
11 Hb_007416_290 0.1359656035 - - PREDICTED: plasma membrane ATPase 4-like [Pyrus x bretschneideri]
12 Hb_009545_030 0.1365779702 - - PREDICTED: folate-biopterin transporter 1, chloroplastic [Jatropha curcas]
13 Hb_001287_060 0.1388145908 transcription factor TF Family: Orphans Salt-tolerance protein, putative [Ricinus communis]
14 Hb_003142_060 0.1390738633 - - PREDICTED: glutamate synthase 1 [NADH], chloroplastic isoform X1 [Jatropha curcas]
15 Hb_008566_080 0.1401368125 - - PREDICTED: uncharacterized protein LOC105647834 [Jatropha curcas]
16 Hb_001922_060 0.1415188191 - - ATP binding protein, putative [Ricinus communis]
17 Hb_022250_160 0.1485324377 - - respiratory burst oxidase A [Manihot esculenta]
18 Hb_004079_100 0.1495416564 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
19 Hb_011129_020 0.1504249649 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
20 Hb_003411_020 0.1505066241 - - alpha-glucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004324_030 Hb_004324_030 Hb_002739_040 Hb_002739_040 Hb_004324_030--Hb_002739_040 Hb_042509_020 Hb_042509_020 Hb_004324_030--Hb_042509_020 Hb_026549_050 Hb_026549_050 Hb_004324_030--Hb_026549_050 Hb_000003_020 Hb_000003_020 Hb_004324_030--Hb_000003_020 Hb_000181_210 Hb_000181_210 Hb_004324_030--Hb_000181_210 Hb_000216_050 Hb_000216_050 Hb_004324_030--Hb_000216_050 Hb_002739_040--Hb_000003_020 Hb_003142_060 Hb_003142_060 Hb_002739_040--Hb_003142_060 Hb_004079_100 Hb_004079_100 Hb_002739_040--Hb_004079_100 Hb_002739_040--Hb_026549_050 Hb_000834_040 Hb_000834_040 Hb_002739_040--Hb_000834_040 Hb_042509_020--Hb_000181_210 Hb_042509_020--Hb_000834_040 Hb_000832_280 Hb_000832_280 Hb_042509_020--Hb_000832_280 Hb_042509_020--Hb_026549_050 Hb_001159_170 Hb_001159_170 Hb_042509_020--Hb_001159_170 Hb_026549_050--Hb_000181_210 Hb_001922_060 Hb_001922_060 Hb_026549_050--Hb_001922_060 Hb_000002_360 Hb_000002_360 Hb_026549_050--Hb_000002_360 Hb_026549_050--Hb_000003_020 Hb_026549_050--Hb_000832_280 Hb_000003_020--Hb_003142_060 Hb_000003_020--Hb_004079_100 Hb_000085_380 Hb_000085_380 Hb_000003_020--Hb_000085_380 Hb_003106_230 Hb_003106_230 Hb_000003_020--Hb_003106_230 Hb_000181_210--Hb_000832_280 Hb_000181_210--Hb_001922_060 Hb_000056_350 Hb_000056_350 Hb_000181_210--Hb_000056_350 Hb_001287_060 Hb_001287_060 Hb_000216_050--Hb_001287_060 Hb_000216_050--Hb_000002_360 Hb_000216_050--Hb_026549_050 Hb_000216_050--Hb_002739_040 Hb_143766_080 Hb_143766_080 Hb_000216_050--Hb_143766_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.156135 3.02823 2.81785 8.07692 0.0288609 0.013062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.712697 0.66747 0.200069 7.19033 2.78399

CAGE analysis