Hb_004324_050

Information

Type -
Description -
Location Contig4324: 26406-31565
Sequence    

Annotation

kegg
ID rcu:RCOM_1579780
description spermidine synthase 1, putative (EC:2.1.1.53)
nr
ID XP_012090095.1
description PREDICTED: spermine synthase [Jatropha curcas]
swissprot
ID Q94BN2
description Spermine synthase OS=Arabidopsis thaliana GN=SPMS PE=1 SV=1
trembl
ID A0A067JEA9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25988 PE=3 SV=1
Gene Ontology
ID GO:0030750
description spermine synthase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42303: 25217-31570 , PASA_asmbl_42304: 26194-26326
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_050 0.0 - - PREDICTED: spermine synthase [Jatropha curcas]
2 Hb_002290_040 0.1216526643 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000103_110 0.1301612001 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
4 Hb_004429_070 0.1324402124 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]
5 Hb_000368_060 0.1336077186 - - thioredoxin H-type 6 [Hevea brasiliensis]
6 Hb_012423_050 0.1340159895 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
7 Hb_001762_060 0.1362725382 - - pantothenate kinase, putative [Ricinus communis]
8 Hb_003147_050 0.137207966 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_000141_030 0.1388731904 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
10 Hb_001538_140 0.1408144676 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
11 Hb_011360_080 0.1424422764 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
12 Hb_002078_480 0.1446372343 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]
13 Hb_000784_030 0.1477401932 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
14 Hb_002659_040 0.1515752546 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
15 Hb_000162_140 0.1524453497 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
16 Hb_000562_040 0.1530426519 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
17 Hb_012573_030 0.1564731704 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000157_040 0.1587527892 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
19 Hb_001006_180 0.1589149673 - - PREDICTED: endonuclease V-like [Jatropha curcas]
20 Hb_000432_050 0.1591028641 - - GTP-binding protein typa/bipa, putative [Ricinus communis]

Gene co-expression network

sample Hb_004324_050 Hb_004324_050 Hb_002290_040 Hb_002290_040 Hb_004324_050--Hb_002290_040 Hb_000103_110 Hb_000103_110 Hb_004324_050--Hb_000103_110 Hb_004429_070 Hb_004429_070 Hb_004324_050--Hb_004429_070 Hb_000368_060 Hb_000368_060 Hb_004324_050--Hb_000368_060 Hb_012423_050 Hb_012423_050 Hb_004324_050--Hb_012423_050 Hb_001762_060 Hb_001762_060 Hb_004324_050--Hb_001762_060 Hb_002756_020 Hb_002756_020 Hb_002290_040--Hb_002756_020 Hb_002290_040--Hb_004429_070 Hb_001959_160 Hb_001959_160 Hb_002290_040--Hb_001959_160 Hb_003147_050 Hb_003147_050 Hb_002290_040--Hb_003147_050 Hb_003943_030 Hb_003943_030 Hb_002290_040--Hb_003943_030 Hb_001153_220 Hb_001153_220 Hb_002290_040--Hb_001153_220 Hb_000103_110--Hb_000368_060 Hb_000562_040 Hb_000562_040 Hb_000103_110--Hb_000562_040 Hb_000784_030 Hb_000784_030 Hb_000103_110--Hb_000784_030 Hb_000141_030 Hb_000141_030 Hb_000103_110--Hb_000141_030 Hb_000157_040 Hb_000157_040 Hb_000103_110--Hb_000157_040 Hb_004429_070--Hb_002756_020 Hb_011360_080 Hb_011360_080 Hb_004429_070--Hb_011360_080 Hb_000327_220 Hb_000327_220 Hb_004429_070--Hb_000327_220 Hb_004429_070--Hb_000141_030 Hb_000368_060--Hb_000562_040 Hb_005539_240 Hb_005539_240 Hb_000368_060--Hb_005539_240 Hb_000368_060--Hb_000784_030 Hb_003581_260 Hb_003581_260 Hb_000368_060--Hb_003581_260 Hb_000368_060--Hb_011360_080 Hb_001006_180 Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_009265_060 Hb_009265_060 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040 Hb_001762_060--Hb_001006_180 Hb_001762_060--Hb_000032_040 Hb_000069_100 Hb_000069_100 Hb_001762_060--Hb_000069_100 Hb_024714_060 Hb_024714_060 Hb_001762_060--Hb_024714_060 Hb_001762_060--Hb_000398_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.4481 4.40575 7.09362 16.8012 18.7161 45.2415
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
150.533 78.9513 235.399 30.8606 14.6545

CAGE analysis