Hb_004324_070

Information

Type -
Description -
Location Contig4324: 40249-51481
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02100g
description POPTRDRAFT_666170; hypothetical protein
nr
ID ACF35047.1
description protein phosphatase 2C [Hevea brasiliensis]
swissprot
ID Q94AT1
description Probable protein phosphatase 2C 76 OS=Arabidopsis thaliana GN=At5g53140 PE=2 SV=1
trembl
ID B5A9S6
description Protein phosphatase 2C OS=Hevea brasiliensis GN=PP2C PE=2 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 76

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42307: 40327-51480 , PASA_asmbl_42308: 40376-51480
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_070 0.0 - - protein phosphatase 2C [Hevea brasiliensis]
2 Hb_003683_160 0.065301235 - - PREDICTED: uncharacterized protein LOC105650622 [Jatropha curcas]
3 Hb_000008_470 0.0689634528 - - calcium/calmodulin-dependent protein kinase kinase, putative [Ricinus communis]
4 Hb_000347_540 0.0832341807 - - protein binding protein, putative [Ricinus communis]
5 Hb_112798_030 0.0864890527 - - conserved hypothetical protein [Ricinus communis]
6 Hb_006452_170 0.087955396 - - -
7 Hb_000069_110 0.0933542934 - - PREDICTED: nephrocystin-3-like isoform X2 [Jatropha curcas]
8 Hb_000768_170 0.0937548624 - - hypothetical protein JCGZ_02624 [Jatropha curcas]
9 Hb_181288_020 0.0958239588 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
10 Hb_000777_040 0.0960593494 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
11 Hb_000175_460 0.0967327493 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
12 Hb_001579_030 0.0970734545 - - Nucleic acid-binding, OB-fold-like protein [Theobroma cacao]
13 Hb_004907_080 0.0995735208 - - zinc finger protein, putative [Ricinus communis]
14 Hb_000815_320 0.0999467061 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
15 Hb_003020_020 0.1008969581 - - PREDICTED: dnaJ homolog subfamily B member 8 isoform X1 [Jatropha curcas]
16 Hb_000046_320 0.1008985327 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
17 Hb_188279_010 0.1009211993 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC9-like [Tarenaya hassleriana]
18 Hb_001009_270 0.1023918525 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 6 homolog [Jatropha curcas]
19 Hb_004678_040 0.1028068789 - - PREDICTED: uncharacterized CRM domain-containing protein At3g25440, chloroplastic [Jatropha curcas]
20 Hb_000403_060 0.1030586838 - - PREDICTED: probable ATP synthase 24 kDa subunit, mitochondrial [Vitis vinifera]

Gene co-expression network

sample Hb_004324_070 Hb_004324_070 Hb_003683_160 Hb_003683_160 Hb_004324_070--Hb_003683_160 Hb_000008_470 Hb_000008_470 Hb_004324_070--Hb_000008_470 Hb_000347_540 Hb_000347_540 Hb_004324_070--Hb_000347_540 Hb_112798_030 Hb_112798_030 Hb_004324_070--Hb_112798_030 Hb_006452_170 Hb_006452_170 Hb_004324_070--Hb_006452_170 Hb_000069_110 Hb_000069_110 Hb_004324_070--Hb_000069_110 Hb_188279_010 Hb_188279_010 Hb_003683_160--Hb_188279_010 Hb_181288_020 Hb_181288_020 Hb_003683_160--Hb_181288_020 Hb_003683_160--Hb_000069_110 Hb_000080_190 Hb_000080_190 Hb_003683_160--Hb_000080_190 Hb_011571_010 Hb_011571_010 Hb_003683_160--Hb_011571_010 Hb_004678_040 Hb_004678_040 Hb_000008_470--Hb_004678_040 Hb_001305_010 Hb_001305_010 Hb_000008_470--Hb_001305_010 Hb_000175_460 Hb_000175_460 Hb_000008_470--Hb_000175_460 Hb_000230_200 Hb_000230_200 Hb_000008_470--Hb_000230_200 Hb_000853_430 Hb_000853_430 Hb_000008_470--Hb_000853_430 Hb_001579_030 Hb_001579_030 Hb_000347_540--Hb_001579_030 Hb_001662_070 Hb_001662_070 Hb_000347_540--Hb_001662_070 Hb_000815_320 Hb_000815_320 Hb_000347_540--Hb_000815_320 Hb_000787_050 Hb_000787_050 Hb_000347_540--Hb_000787_050 Hb_025645_010 Hb_025645_010 Hb_000347_540--Hb_025645_010 Hb_112798_030--Hb_011571_010 Hb_153112_020 Hb_153112_020 Hb_112798_030--Hb_153112_020 Hb_000331_080 Hb_000331_080 Hb_112798_030--Hb_000331_080 Hb_004931_090 Hb_004931_090 Hb_112798_030--Hb_004931_090 Hb_008878_030 Hb_008878_030 Hb_112798_030--Hb_008878_030 Hb_011224_110 Hb_011224_110 Hb_112798_030--Hb_011224_110 Hb_007317_200 Hb_007317_200 Hb_006452_170--Hb_007317_200 Hb_050514_010 Hb_050514_010 Hb_006452_170--Hb_050514_010 Hb_007389_010 Hb_007389_010 Hb_006452_170--Hb_007389_010 Hb_000866_260 Hb_000866_260 Hb_006452_170--Hb_000866_260 Hb_002235_250 Hb_002235_250 Hb_006452_170--Hb_002235_250 Hb_011867_010 Hb_011867_010 Hb_000069_110--Hb_011867_010 Hb_011316_040 Hb_011316_040 Hb_000069_110--Hb_011316_040 Hb_002609_020 Hb_002609_020 Hb_000069_110--Hb_002609_020 Hb_132835_010 Hb_132835_010 Hb_000069_110--Hb_132835_010 Hb_001277_330 Hb_001277_330 Hb_000069_110--Hb_001277_330 Hb_000510_320 Hb_000510_320 Hb_000069_110--Hb_000510_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
62.2038 16.2001 45.8248 33.6053 45.6412 45.8161
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.7316 67.5288 84.2716 18.7534 26.2369

CAGE analysis