Hb_004324_080

Information

Type -
Description -
Location Contig4324: 42262-51618
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42309: 52138-57973
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_080 0.0 - - -
2 Hb_000046_160 0.1959710013 - - Pentatricopeptide repeat-containing protein, mitochondrial [Glycine soja]
3 Hb_181240_010 0.2100061738 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000608_460 0.2257010621 - - -
5 Hb_003005_040 0.2329154513 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_004734_050 0.2631174263 - - -
7 Hb_014568_020 0.266033813 - - PREDICTED: GPI mannosyltransferase 2 [Jatropha curcas]
8 Hb_004448_060 0.2733186363 - - conserved hypothetical protein [Ricinus communis]
9 Hb_026239_010 0.2753760974 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_005344_030 0.28203916 - - PREDICTED: UDP-glycosyltransferase 74F2-like [Jatropha curcas]
11 Hb_002809_150 0.2914126729 transcription factor TF Family: M-type hypothetical protein CISIN_1g0283632mg, partial [Citrus sinensis]
12 Hb_042202_050 0.2972301987 - - TPA: hypothetical protein ZEAMMB73_683745 [Zea mays]
13 Hb_000915_030 0.30305846 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
14 Hb_000530_120 0.3054688731 - - copper transport protein ATOX1 [Hevea brasiliensis]
15 Hb_178063_010 0.3068441211 - - hypothetical protein JCGZ_26531 [Jatropha curcas]
16 Hb_001558_050 0.3095102734 - - PREDICTED: uncharacterized protein LOC105641745 [Jatropha curcas]
17 Hb_011484_010 0.3122465223 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_000429_090 0.316371722 - - PREDICTED: carboxyl-terminal-processing peptidase 3, chloroplastic [Jatropha curcas]
19 Hb_001284_010 0.318959808 - - hypothetical protein CISIN_1g0279981mg, partial [Citrus sinensis]
20 Hb_000679_220 0.3239876265 - - PREDICTED: uncharacterized protein LOC105637638 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_080 Hb_004324_080 Hb_000046_160 Hb_000046_160 Hb_004324_080--Hb_000046_160 Hb_181240_010 Hb_181240_010 Hb_004324_080--Hb_181240_010 Hb_000608_460 Hb_000608_460 Hb_004324_080--Hb_000608_460 Hb_003005_040 Hb_003005_040 Hb_004324_080--Hb_003005_040 Hb_004734_050 Hb_004734_050 Hb_004324_080--Hb_004734_050 Hb_014568_020 Hb_014568_020 Hb_004324_080--Hb_014568_020 Hb_026239_010 Hb_026239_010 Hb_000046_160--Hb_026239_010 Hb_020334_010 Hb_020334_010 Hb_000046_160--Hb_020334_010 Hb_000046_160--Hb_000608_460 Hb_011484_010 Hb_011484_010 Hb_000046_160--Hb_011484_010 Hb_061802_010 Hb_061802_010 Hb_000046_160--Hb_061802_010 Hb_181240_010--Hb_004734_050 Hb_000915_030 Hb_000915_030 Hb_181240_010--Hb_000915_030 Hb_181240_010--Hb_014568_020 Hb_181240_010--Hb_000608_460 Hb_181240_010--Hb_003005_040 Hb_000608_460--Hb_014568_020 Hb_002888_010 Hb_002888_010 Hb_000608_460--Hb_002888_010 Hb_000608_460--Hb_000915_030 Hb_004448_060 Hb_004448_060 Hb_000608_460--Hb_004448_060 Hb_006132_030 Hb_006132_030 Hb_003005_040--Hb_006132_030 Hb_003005_040--Hb_004734_050 Hb_001229_020 Hb_001229_020 Hb_003005_040--Hb_001229_020 Hb_043708_010 Hb_043708_010 Hb_003005_040--Hb_043708_010 Hb_003124_060 Hb_003124_060 Hb_004734_050--Hb_003124_060 Hb_004734_050--Hb_004448_060 Hb_004734_050--Hb_000915_030 Hb_042202_050 Hb_042202_050 Hb_004734_050--Hb_042202_050 Hb_004734_050--Hb_011484_010 Hb_014568_020--Hb_000915_030 Hb_014568_020--Hb_002888_010 Hb_000363_150 Hb_000363_150 Hb_014568_020--Hb_000363_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0451243 0 0 0.0446876 0 0.0688355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.209752 0.576933 0.430795 0 0.635357

CAGE analysis