Hb_004324_120

Information

Type -
Description -
Location Contig4324: 81645-90305
Sequence    

Annotation

kegg
ID pop:POPTR_0015s02230g
description POPTRDRAFT_251115; hypothetical protein
nr
ID KHG01063.1
description ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
swissprot
ID Q9FGM0
description ATP-dependent zinc metalloprotease FTSH 11, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=FTSH11 PE=1 SV=1
trembl
ID A0A0B0MFW1
description ATP-dependent zinc metalloprotease YME1L1 OS=Gossypium arboreum GN=F383_22291 PE=3 SV=1
Gene Ontology
ID GO:0016020
description atp-dependent zinc metalloprotease ftsh chloroplastic mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42314: 81701-84478 , PASA_asmbl_42315: 89511-90268 , PASA_asmbl_42316: 91027-99700
cDNA
(Sanger)
(ID:Location)		 006_D23.ab1: 89542-90268

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_120 0.0 - - ATP-dependent zinc metalloprotease YME1L1 [Gossypium arboreum]
2 Hb_005015_020 0.0727905549 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
3 Hb_012539_040 0.0959642463 transcription factor TF Family: CPP hypothetical protein JCGZ_07765 [Jatropha curcas]
4 Hb_004346_040 0.1009860355 - - hypothetical protein POPTR_0016s06630g [Populus trichocarpa]
5 Hb_005288_180 0.1109176461 - - PREDICTED: pentatricopeptide repeat-containing protein At3g04760, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_137600_010 0.1117037918 - - 50S ribosomal protein L1p, putative [Ricinus communis]
7 Hb_000446_040 0.1143002152 - - PREDICTED: uncharacterized protein ycf45 [Jatropha curcas]
8 Hb_000093_140 0.1176300487 - - PREDICTED: fructokinase-like 2, chloroplastic [Jatropha curcas]
9 Hb_148146_010 0.1231896635 - - coproporphyrinogen III oxidase [Ziziphus jujuba]
10 Hb_001953_100 0.1235098586 - - PREDICTED: glutamate-1-semialdehyde 2,1-aminomutase 2, chloroplastic [Jatropha curcas]
11 Hb_140389_010 0.1243135538 - - Ran GTPase binding protein, putative [Ricinus communis]
12 Hb_002799_130 0.1289233075 - - PREDICTED: uncharacterized protein LOC105638514 [Jatropha curcas]
13 Hb_000933_110 0.1303711156 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 3 [Jatropha curcas]
14 Hb_000005_100 0.1312501764 - - PREDICTED: pheophorbide a oxygenase, chloroplastic [Jatropha curcas]
15 Hb_006277_080 0.1319601518 - - PREDICTED: uncharacterized protein LOC105649701 [Jatropha curcas]
16 Hb_004223_270 0.1335698502 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
17 Hb_005074_050 0.1351702479 - - PREDICTED: myosin-6-like [Jatropha curcas]
18 Hb_000934_260 0.1362988207 - - Thylakoid lumenal 29.8 kDa protein, chloroplast precursor, putative [Ricinus communis]
19 Hb_003055_070 0.1372262877 - - PREDICTED: katanin p80 WD40 repeat-containing subunit B1 homolog isoform X1 [Jatropha curcas]
20 Hb_005116_100 0.1398195256 - - PREDICTED: uncharacterized protein LOC105649999 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_120 Hb_004324_120 Hb_005015_020 Hb_005015_020 Hb_004324_120--Hb_005015_020 Hb_012539_040 Hb_012539_040 Hb_004324_120--Hb_012539_040 Hb_004346_040 Hb_004346_040 Hb_004324_120--Hb_004346_040 Hb_005288_180 Hb_005288_180 Hb_004324_120--Hb_005288_180 Hb_137600_010 Hb_137600_010 Hb_004324_120--Hb_137600_010 Hb_000446_040 Hb_000446_040 Hb_004324_120--Hb_000446_040 Hb_005015_020--Hb_004346_040 Hb_005015_020--Hb_005288_180 Hb_005015_020--Hb_012539_040 Hb_005015_020--Hb_000446_040 Hb_002799_130 Hb_002799_130 Hb_005015_020--Hb_002799_130 Hb_012539_040--Hb_004346_040 Hb_140389_010 Hb_140389_010 Hb_012539_040--Hb_140389_010 Hb_000093_140 Hb_000093_140 Hb_012539_040--Hb_000093_140 Hb_000933_110 Hb_000933_110 Hb_012539_040--Hb_000933_110 Hb_004346_040--Hb_000093_140 Hb_000906_070 Hb_000906_070 Hb_004346_040--Hb_000906_070 Hb_013968_010 Hb_013968_010 Hb_004346_040--Hb_013968_010 Hb_002447_050 Hb_002447_050 Hb_004346_040--Hb_002447_050 Hb_005288_180--Hb_004346_040 Hb_001250_020 Hb_001250_020 Hb_005288_180--Hb_001250_020 Hb_003929_220 Hb_003929_220 Hb_005288_180--Hb_003929_220 Hb_002928_030 Hb_002928_030 Hb_005288_180--Hb_002928_030 Hb_000479_210 Hb_000479_210 Hb_137600_010--Hb_000479_210 Hb_003602_030 Hb_003602_030 Hb_137600_010--Hb_003602_030 Hb_001999_260 Hb_001999_260 Hb_137600_010--Hb_001999_260 Hb_005488_190 Hb_005488_190 Hb_137600_010--Hb_005488_190 Hb_173660_010 Hb_173660_010 Hb_137600_010--Hb_173660_010 Hb_003055_070 Hb_003055_070 Hb_000446_040--Hb_003055_070 Hb_000446_040--Hb_000933_110 Hb_000334_050 Hb_000334_050 Hb_000446_040--Hb_000334_050 Hb_000446_040--Hb_004346_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.47167 12.2661 28.3981 6.06788 3.52888 2.77883
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.54699 1.60827 1.45328 4.37163 32.0383

CAGE analysis