Hb_004324_170

Information

Type -
Description -
Location Contig4324: 113196-114173
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_170 0.0 - - -
2 Hb_007545_040 0.0071669066 - - PREDICTED: uncharacterized protein LOC104884077 [Beta vulgaris subsp. vulgaris]
3 Hb_162189_010 0.0131521291 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
4 Hb_156850_010 0.0537577161 - - PREDICTED: uncharacterized protein LOC105635403 [Jatropha curcas]
5 Hb_001247_340 0.0879671876 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
6 Hb_132840_040 0.1278246088 - - 1-aminocyclopropane-1-carboxylate oxidase, putative [Ricinus communis]
7 Hb_000093_070 0.1372994438 transcription factor TF Family: C2C2-YABBY Protein CRABS CLAW, putative [Ricinus communis]
8 Hb_087999_010 0.1380030186 - - PREDICTED: uncharacterized protein LOC105640118 [Jatropha curcas]
9 Hb_004491_020 0.1543952742 - - PREDICTED: putative inactive cadmium/zinc-transporting ATPase HMA3 [Jatropha curcas]
10 Hb_000264_150 0.1633511926 - - PREDICTED: uncharacterized protein LOC103870759 [Brassica rapa]
11 Hb_009078_040 0.1857541041 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
12 Hb_001722_090 0.1934752993 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
13 Hb_001709_100 0.1943185345 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
14 Hb_011349_010 0.2832788369 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
15 Hb_022680_020 0.2917582565 - - PREDICTED: MLP-like protein 423 [Jatropha curcas]
16 Hb_009083_040 0.3178505671 - - hypothetical protein JCGZ_12563 [Jatropha curcas]
17 Hb_015183_040 0.3200056385 - - -
18 Hb_001205_010 0.3603666939 - - -
19 Hb_000313_020 0.365867613 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
20 Hb_000574_500 0.3704518457 - - hypothetical protein JCGZ_06123 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_170 Hb_004324_170 Hb_007545_040 Hb_007545_040 Hb_004324_170--Hb_007545_040 Hb_162189_010 Hb_162189_010 Hb_004324_170--Hb_162189_010 Hb_156850_010 Hb_156850_010 Hb_004324_170--Hb_156850_010 Hb_001247_340 Hb_001247_340 Hb_004324_170--Hb_001247_340 Hb_132840_040 Hb_132840_040 Hb_004324_170--Hb_132840_040 Hb_000093_070 Hb_000093_070 Hb_004324_170--Hb_000093_070 Hb_007545_040--Hb_162189_010 Hb_007545_040--Hb_156850_010 Hb_007545_040--Hb_001247_340 Hb_007545_040--Hb_132840_040 Hb_007545_040--Hb_000093_070 Hb_162189_010--Hb_156850_010 Hb_162189_010--Hb_001247_340 Hb_162189_010--Hb_132840_040 Hb_004491_020 Hb_004491_020 Hb_162189_010--Hb_004491_020 Hb_156850_010--Hb_132840_040 Hb_156850_010--Hb_000093_070 Hb_087999_010 Hb_087999_010 Hb_156850_010--Hb_087999_010 Hb_001247_340--Hb_004491_020 Hb_000264_150 Hb_000264_150 Hb_001247_340--Hb_000264_150 Hb_001722_090 Hb_001722_090 Hb_001247_340--Hb_001722_090 Hb_132840_040--Hb_000093_070 Hb_132840_040--Hb_087999_010 Hb_009078_040 Hb_009078_040 Hb_132840_040--Hb_009078_040 Hb_000093_070--Hb_087999_010 Hb_000093_070--Hb_009078_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.112546 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.1705 0 0 0 0

CAGE analysis