Hb_004324_180

Information

Type -
Description -
Location Contig4324: 114184-116673
Sequence    

Annotation

kegg
ID rcu:RCOM_1580400
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002513583.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RIL4
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1580400 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_180 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_008895_010 0.0013425084 - - conserved hypothetical protein [Ricinus communis]
3 Hb_039046_010 0.0052186008 - - PREDICTED: uncharacterized protein LOC105644040 isoform X2 [Jatropha curcas]
4 Hb_009615_140 0.0068650299 - - PREDICTED: alpha-galactosidase-like isoform X2 [Pyrus x bretschneideri]
5 Hb_126871_010 0.0071789772 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
6 Hb_000172_040 0.0076046948 - - Tetratricopeptide repeat protein, putative [Ricinus communis]
7 Hb_006111_050 0.0096854923 transcription factor TF Family: AP2 Protein AINTEGUMENTA, putative [Ricinus communis]
8 Hb_176760_010 0.0097006552 - - PREDICTED: uncharacterized protein LOC105641027 [Jatropha curcas]
9 Hb_004881_090 0.0139586031 - - hypothetical protein POPTR_0002s06050g [Populus trichocarpa]
10 Hb_000834_120 0.0164393573 transcription factor TF Family: OFP PREDICTED: transcription repressor OFP8 [Populus euphratica]
11 Hb_007058_020 0.0169265522 - - -
12 Hb_000373_090 0.0178245205 - - PREDICTED: abscisic acid 8'-hydroxylase 3-like [Prunus mume]
13 Hb_001926_060 0.0179055275 - - PREDICTED: uncharacterized protein LOC105649615 isoform X2 [Jatropha curcas]
14 Hb_003486_040 0.0181645667 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
15 Hb_163180_010 0.0190089981 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
16 Hb_000049_320 0.0191096994 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA5 [Jatropha curcas]
17 Hb_001248_160 0.0229310843 transcription factor TF Family: C2H2 TRANSPARENT TESTA 1 protein, putative [Ricinus communis]
18 Hb_008686_050 0.0239160652 - - -
19 Hb_001136_150 0.0265551875 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000130_430 0.0272782725 - - PREDICTED: UDP-glycosyltransferase 79B6-like [Jatropha curcas]

Gene co-expression network

sample Hb_004324_180 Hb_004324_180 Hb_008895_010 Hb_008895_010 Hb_004324_180--Hb_008895_010 Hb_039046_010 Hb_039046_010 Hb_004324_180--Hb_039046_010 Hb_009615_140 Hb_009615_140 Hb_004324_180--Hb_009615_140 Hb_126871_010 Hb_126871_010 Hb_004324_180--Hb_126871_010 Hb_000172_040 Hb_000172_040 Hb_004324_180--Hb_000172_040 Hb_006111_050 Hb_006111_050 Hb_004324_180--Hb_006111_050 Hb_008895_010--Hb_039046_010 Hb_008895_010--Hb_009615_140 Hb_176760_010 Hb_176760_010 Hb_008895_010--Hb_176760_010 Hb_008895_010--Hb_126871_010 Hb_008895_010--Hb_000172_040 Hb_039046_010--Hb_009615_140 Hb_039046_010--Hb_126871_010 Hb_039046_010--Hb_000172_040 Hb_039046_010--Hb_006111_050 Hb_009615_140--Hb_126871_010 Hb_009615_140--Hb_000172_040 Hb_009615_140--Hb_006111_050 Hb_004881_090 Hb_004881_090 Hb_009615_140--Hb_004881_090 Hb_126871_010--Hb_000172_040 Hb_126871_010--Hb_006111_050 Hb_126871_010--Hb_004881_090 Hb_000172_040--Hb_006111_050 Hb_000172_040--Hb_004881_090 Hb_006111_050--Hb_004881_090 Hb_000834_120 Hb_000834_120 Hb_006111_050--Hb_000834_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0145696 0.0491082 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis