Hb_004324_200

Information

Type -
Description -
Location Contig4324: 123981-124794
Sequence    

Annotation

kegg
ID rcu:RCOM_1580430
description triptychon and cpc, putative
nr
ID XP_011001911.1
description PREDICTED: transcription factor TRY-like [Populus euphratica]
swissprot
ID Q8GV05
description Transcription factor TRY OS=Arabidopsis thaliana GN=TRY PE=1 SV=1
trembl
ID B9RIL7
description Triptychon and cpc, putative OS=Ricinus communis GN=RCOM_1580430 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor try-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_200 0.0 - - PREDICTED: transcription factor TRY-like [Populus euphratica]
2 Hb_003786_060 0.1276807857 - - PREDICTED: transmembrane protein 220 [Jatropha curcas]
3 Hb_006538_070 0.1327634792 - - hypothetical protein JCGZ_18339 [Jatropha curcas]
4 Hb_000347_530 0.1379683208 transcription factor TF Family: MYB PREDICTED: transcription factor MYB114-like [Jatropha curcas]
5 Hb_002301_420 0.1415310907 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
6 Hb_006538_050 0.1440936819 - - hypothetical protein RCOM_1308310 [Ricinus communis]
7 Hb_164162_020 0.1481555925 - - PREDICTED: uncharacterized protein LOC105646964 [Jatropha curcas]
8 Hb_003205_030 0.1486565706 - - Pectinesterase inhibitor, putative [Ricinus communis]
9 Hb_002232_400 0.1515423917 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH25-like [Jatropha curcas]
10 Hb_003064_010 0.1521784782 - - Senescence-related gene 1 [Theobroma cacao]
11 Hb_004544_070 0.1527462795 - - unnamed protein product [Vitis vinifera]
12 Hb_000540_030 0.1571256274 - - Chitinase 1 precursor, putative [Ricinus communis]
13 Hb_000175_480 0.1576847976 - - hypothetical protein JCGZ_06165 [Jatropha curcas]
14 Hb_000933_200 0.1590017361 - - Cationic peroxidase 2 precursor, putative [Ricinus communis]
15 Hb_000617_340 0.1595187455 - - respiratory burst oxidase B [Manihot esculenta]
16 Hb_004021_100 0.1599500653 - - -
17 Hb_018591_010 0.1622870869 - - kinase, putative [Ricinus communis]
18 Hb_002042_200 0.164484736 transcription factor TF Family: bHLH DNA binding protein, putative [Ricinus communis]
19 Hb_000556_140 0.1649673544 transcription factor TF Family: GRF PREDICTED: growth-regulating factor 9 [Jatropha curcas]
20 Hb_001473_100 0.1662861231 - - chalcone synthase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_200 Hb_004324_200 Hb_003786_060 Hb_003786_060 Hb_004324_200--Hb_003786_060 Hb_006538_070 Hb_006538_070 Hb_004324_200--Hb_006538_070 Hb_000347_530 Hb_000347_530 Hb_004324_200--Hb_000347_530 Hb_002301_420 Hb_002301_420 Hb_004324_200--Hb_002301_420 Hb_006538_050 Hb_006538_050 Hb_004324_200--Hb_006538_050 Hb_164162_020 Hb_164162_020 Hb_004324_200--Hb_164162_020 Hb_003786_060--Hb_006538_050 Hb_003052_070 Hb_003052_070 Hb_003786_060--Hb_003052_070 Hb_007747_030 Hb_007747_030 Hb_003786_060--Hb_007747_030 Hb_000567_310 Hb_000567_310 Hb_003786_060--Hb_000567_310 Hb_001328_110 Hb_001328_110 Hb_003786_060--Hb_001328_110 Hb_000933_200 Hb_000933_200 Hb_003786_060--Hb_000933_200 Hb_006538_070--Hb_164162_020 Hb_001901_010 Hb_001901_010 Hb_006538_070--Hb_001901_010 Hb_000948_070 Hb_000948_070 Hb_006538_070--Hb_000948_070 Hb_006538_070--Hb_006538_050 Hb_001971_070 Hb_001971_070 Hb_006538_070--Hb_001971_070 Hb_000005_270 Hb_000005_270 Hb_006538_070--Hb_000005_270 Hb_018591_010 Hb_018591_010 Hb_000347_530--Hb_018591_010 Hb_004544_070 Hb_004544_070 Hb_000347_530--Hb_004544_070 Hb_000934_170 Hb_000934_170 Hb_000347_530--Hb_000934_170 Hb_000347_530--Hb_002301_420 Hb_002749_070 Hb_002749_070 Hb_000347_530--Hb_002749_070 Hb_010407_120 Hb_010407_120 Hb_000347_530--Hb_010407_120 Hb_002301_420--Hb_018591_010 Hb_164283_010 Hb_164283_010 Hb_002301_420--Hb_164283_010 Hb_012368_080 Hb_012368_080 Hb_002301_420--Hb_012368_080 Hb_000540_030 Hb_000540_030 Hb_002301_420--Hb_000540_030 Hb_006637_040 Hb_006637_040 Hb_002301_420--Hb_006637_040 Hb_018133_110 Hb_018133_110 Hb_002301_420--Hb_018133_110 Hb_000120_710 Hb_000120_710 Hb_006538_050--Hb_000120_710 Hb_006538_050--Hb_001328_110 Hb_006538_050--Hb_003052_070 Hb_006538_050--Hb_000567_310 Hb_000617_340 Hb_000617_340 Hb_006538_050--Hb_000617_340 Hb_164162_020--Hb_001901_010 Hb_164162_020--Hb_001971_070 Hb_164162_020--Hb_000948_070 Hb_166813_010 Hb_166813_010 Hb_164162_020--Hb_166813_010 Hb_164162_020--Hb_006538_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.706669 0.681577 1.72227 0 0.195128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 7.80938 0

CAGE analysis