Hb_004324_230

Information

Type transcription factor
Description TF Family: bHLH
Location Contig4324: 139906-142521
Sequence    

Annotation

kegg
ID rcu:RCOM_1580560
description DNA binding protein, putative
nr
ID XP_012090117.1
description PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
swissprot
ID Q700C7
description Transcription factor SPEECHLESS OS=Arabidopsis thaliana GN=SPCH PE=1 SV=1
trembl
ID B9RIM0
description DNA binding protein, putative OS=Ricinus communis GN=RCOM_1580560 PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor speechless-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_230 0.0 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
2 Hb_004228_060 0.0788799907 - - Tubulin beta-2 chain [Triticum urartu]
3 Hb_000010_450 0.1375413251 - - purine permease, putative [Ricinus communis]
4 Hb_000592_120 0.1377501017 transcription factor TF Family: HB PREDICTED: WUSCHEL-related homeobox 1 [Jatropha curcas]
5 Hb_002843_200 0.1447194719 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000212_170 0.1591615291 - - PREDICTED: GDSL esterase/lipase At2g30310-like [Jatropha curcas]
7 Hb_003638_060 0.1621709417 transcription factor TF Family: Orphans PREDICTED: zinc finger protein CONSTANS-like [Jatropha curcas]
8 Hb_162008_040 0.1690002242 - - hypothetical protein CL1725Contig1_03, partial [Pinus taeda]
9 Hb_078641_020 0.1694838275 - - Pectinesterase-2 precursor, putative [Ricinus communis]
10 Hb_014109_030 0.1706758075 transcription factor TF Family: bHLH PREDICTED: transcription factor SPEECHLESS [Jatropha curcas]
11 Hb_012573_060 0.1708700565 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 52C-like [Vitis vinifera]
12 Hb_000844_120 0.1708994184 - - hypothetical protein JCGZ_09179 [Jatropha curcas]
13 Hb_003994_210 0.170952964 - - zinc finger protein, putative [Ricinus communis]
14 Hb_004447_040 0.1710980165 - - cyclin d, putative [Ricinus communis]
15 Hb_000680_080 0.1712604317 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
16 Hb_022929_010 0.1713154501 - - zinc/iron transporter, putative [Ricinus communis]
17 Hb_002030_140 0.1714852653 - - PREDICTED: protein MIZU-KUSSEI 1-like [Jatropha curcas]
18 Hb_001546_100 0.1723232387 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
19 Hb_000500_380 0.1724701786 - - PREDICTED: GDSL esterase/lipase At5g45670-like [Jatropha curcas]
20 Hb_004744_030 0.1725783422 - - PREDICTED: ankyrin repeat-containing protein At5g02620-like [Jatropha curcas]

Gene co-expression network

sample Hb_004324_230 Hb_004324_230 Hb_004228_060 Hb_004228_060 Hb_004324_230--Hb_004228_060 Hb_000010_450 Hb_000010_450 Hb_004324_230--Hb_000010_450 Hb_000592_120 Hb_000592_120 Hb_004324_230--Hb_000592_120 Hb_002843_200 Hb_002843_200 Hb_004324_230--Hb_002843_200 Hb_000212_170 Hb_000212_170 Hb_004324_230--Hb_000212_170 Hb_003638_060 Hb_003638_060 Hb_004324_230--Hb_003638_060 Hb_004228_060--Hb_002843_200 Hb_004228_060--Hb_000010_450 Hb_182291_010 Hb_182291_010 Hb_004228_060--Hb_182291_010 Hb_002049_040 Hb_002049_040 Hb_004228_060--Hb_002049_040 Hb_004598_010 Hb_004598_010 Hb_004228_060--Hb_004598_010 Hb_000010_450--Hb_003638_060 Hb_000010_450--Hb_000592_120 Hb_003605_140 Hb_003605_140 Hb_000010_450--Hb_003605_140 Hb_078641_020 Hb_078641_020 Hb_000010_450--Hb_078641_020 Hb_000592_120--Hb_000212_170 Hb_162008_040 Hb_162008_040 Hb_000592_120--Hb_162008_040 Hb_121680_010 Hb_121680_010 Hb_000592_120--Hb_121680_010 Hb_008252_010 Hb_008252_010 Hb_000592_120--Hb_008252_010 Hb_162008_020 Hb_162008_020 Hb_000592_120--Hb_162008_020 Hb_000077_430 Hb_000077_430 Hb_000592_120--Hb_000077_430 Hb_002026_040 Hb_002026_040 Hb_002843_200--Hb_002026_040 Hb_013849_010 Hb_013849_010 Hb_002843_200--Hb_013849_010 Hb_000155_280 Hb_000155_280 Hb_002843_200--Hb_000155_280 Hb_000227_010 Hb_000227_010 Hb_002843_200--Hb_000227_010 Hb_006485_020 Hb_006485_020 Hb_002843_200--Hb_006485_020 Hb_007816_010 Hb_007816_010 Hb_002843_200--Hb_007816_010 Hb_000212_170--Hb_162008_040 Hb_002030_140 Hb_002030_140 Hb_000212_170--Hb_002030_140 Hb_022929_010 Hb_022929_010 Hb_000212_170--Hb_022929_010 Hb_000680_080 Hb_000680_080 Hb_000212_170--Hb_000680_080 Hb_001546_100 Hb_001546_100 Hb_000212_170--Hb_001546_100 Hb_012573_060 Hb_012573_060 Hb_000212_170--Hb_012573_060 Hb_010916_010 Hb_010916_010 Hb_003638_060--Hb_010916_010 Hb_003638_060--Hb_000592_120 Hb_003638_060--Hb_004228_060 Hb_003638_060--Hb_078641_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.12511 0.0918585 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.073189 0 0

CAGE analysis