Hb_004324_270

Information

Type -
Description -
Location Contig4324: 163685-167773
Sequence    

Annotation

kegg
ID rcu:RCOM_1580610
description mitochondrial carrier protein, putative
nr
ID XP_012090123.1
description PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
swissprot
ID Q944H5
description Mitochondrial carrier protein MTM1 OS=Arabidopsis thaliana GN=MTM1 PE=2 SV=1
trembl
ID A0A067JEC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26008 PE=3 SV=1
Gene Ontology
ID GO:0016021
description mitochondrial carrier protein mtm1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42328: 163574-167805
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_270 0.0 - - PREDICTED: mitochondrial carrier protein MTM1 [Jatropha curcas]
2 Hb_011457_050 0.0617681425 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
3 Hb_000046_050 0.0687627312 - - PREDICTED: LEC14B homolog [Jatropha curcas]
4 Hb_005446_010 0.0709525535 - - PREDICTED: zinc finger protein 830 [Jatropha curcas]
5 Hb_002408_020 0.0745713191 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
6 Hb_003768_030 0.0752720473 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
7 Hb_002183_060 0.0775118791 transcription factor TF Family: C3H conserved hypothetical protein [Ricinus communis]
8 Hb_012423_030 0.0792054853 - - PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic isoform X1 [Jatropha curcas]
9 Hb_000107_160 0.0792127678 - - PREDICTED: uncharacterized protein LOC105645584 [Jatropha curcas]
10 Hb_000327_060 0.0805881541 - - PREDICTED: uncharacterized protein LOC105635258 isoform X2 [Jatropha curcas]
11 Hb_012675_050 0.0807337875 - - conserved hypothetical protein [Ricinus communis]
12 Hb_017225_020 0.0823497722 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
13 Hb_000962_040 0.0827957371 - - heat shock protein binding protein, putative [Ricinus communis]
14 Hb_000061_210 0.0845061287 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
15 Hb_103118_010 0.0871697884 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
16 Hb_000614_220 0.0879179184 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
17 Hb_001489_080 0.0890735354 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
18 Hb_000827_050 0.092349435 - - PREDICTED: tyrosine--tRNA ligase, cytoplasmic-like [Jatropha curcas]
19 Hb_003053_020 0.0925804031 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
20 Hb_000436_130 0.093171918 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_270 Hb_004324_270 Hb_011457_050 Hb_011457_050 Hb_004324_270--Hb_011457_050 Hb_000046_050 Hb_000046_050 Hb_004324_270--Hb_000046_050 Hb_005446_010 Hb_005446_010 Hb_004324_270--Hb_005446_010 Hb_002408_020 Hb_002408_020 Hb_004324_270--Hb_002408_020 Hb_003768_030 Hb_003768_030 Hb_004324_270--Hb_003768_030 Hb_002183_060 Hb_002183_060 Hb_004324_270--Hb_002183_060 Hb_011457_050--Hb_002408_020 Hb_011457_050--Hb_003768_030 Hb_000061_210 Hb_000061_210 Hb_011457_050--Hb_000061_210 Hb_000566_120 Hb_000566_120 Hb_011457_050--Hb_000566_120 Hb_011457_050--Hb_002183_060 Hb_012675_050 Hb_012675_050 Hb_000046_050--Hb_012675_050 Hb_032264_070 Hb_032264_070 Hb_000046_050--Hb_032264_070 Hb_003540_240 Hb_003540_240 Hb_000046_050--Hb_003540_240 Hb_000046_050--Hb_000061_210 Hb_000107_160 Hb_000107_160 Hb_000046_050--Hb_000107_160 Hb_017225_020 Hb_017225_020 Hb_005446_010--Hb_017225_020 Hb_000827_050 Hb_000827_050 Hb_005446_010--Hb_000827_050 Hb_011512_040 Hb_011512_040 Hb_005446_010--Hb_011512_040 Hb_000327_060 Hb_000327_060 Hb_005446_010--Hb_000327_060 Hb_005446_010--Hb_003768_030 Hb_002408_020--Hb_000061_210 Hb_000260_030 Hb_000260_030 Hb_002408_020--Hb_000260_030 Hb_029879_130 Hb_029879_130 Hb_002408_020--Hb_029879_130 Hb_002408_020--Hb_012675_050 Hb_001322_110 Hb_001322_110 Hb_002408_020--Hb_001322_110 Hb_000053_020 Hb_000053_020 Hb_003768_030--Hb_000053_020 Hb_001195_200 Hb_001195_200 Hb_003768_030--Hb_001195_200 Hb_008453_030 Hb_008453_030 Hb_003768_030--Hb_008453_030 Hb_001489_080 Hb_001489_080 Hb_003768_030--Hb_001489_080 Hb_012423_030 Hb_012423_030 Hb_003768_030--Hb_012423_030 Hb_000421_220 Hb_000421_220 Hb_002183_060--Hb_000421_220 Hb_001386_040 Hb_001386_040 Hb_002183_060--Hb_001386_040 Hb_002183_060--Hb_008453_030 Hb_015934_070 Hb_015934_070 Hb_002183_060--Hb_015934_070 Hb_031862_100 Hb_031862_100 Hb_002183_060--Hb_031862_100 Hb_003697_040 Hb_003697_040 Hb_002183_060--Hb_003697_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03709 1.68221 2.81327 2.24963 2.23429 2.96766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.15498 7.34438 5.09641 3.32725 4.57811

CAGE analysis