Hb_004324_280

Information

Type -
Description -
Location Contig4324: 170239-172639
Sequence    

Annotation

kegg
ID rcu:RCOM_1580630
description hypothetical protein
nr
ID XP_012090124.1
description PREDICTED: plastid division protein PDV1 [Jatropha curcas]
swissprot
ID Q9FK13
description Plastid division protein PDV1 OS=Arabidopsis thaliana GN=PDV1 PE=1 SV=1
trembl
ID A0A067JRN3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26010 PE=4 SV=1
Gene Ontology
ID GO:0010020
description plastid division protein pdv1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42329: 170347-172460
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_280 0.0 - - PREDICTED: plastid division protein PDV1 [Jatropha curcas]
2 Hb_000186_280 0.0708365465 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
3 Hb_001969_040 0.0716553371 - - PREDICTED: serine-threonine kinase receptor-associated protein-like [Jatropha curcas]
4 Hb_002818_040 0.075255854 - - tRNA synthetase-related family protein [Populus trichocarpa]
5 Hb_000340_510 0.0755108689 - - PREDICTED: serine/threonine-protein phosphatase BSL1 [Jatropha curcas]
6 Hb_000462_150 0.0762503632 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 38 [Jatropha curcas]
7 Hb_001141_330 0.0765289217 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14850 [Jatropha curcas]
8 Hb_000001_180 0.0785470441 - - PREDICTED: uncharacterized protein LOC105648978 [Jatropha curcas]
9 Hb_009411_020 0.0789793879 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
10 Hb_001936_050 0.0819319729 - - PREDICTED: pentatricopeptide repeat-containing protein At4g08210-like [Prunus mume]
11 Hb_000625_020 0.0850442663 - - conserved hypothetical protein [Ricinus communis]
12 Hb_005307_030 0.0852466762 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
13 Hb_009404_010 0.0857074004 - - PREDICTED: casein kinase II subunit alpha-2-like [Glycine max]
14 Hb_005306_110 0.0882343295 - - casein kinase, putative [Ricinus communis]
15 Hb_008725_250 0.0893724472 - - PREDICTED: phosphoribosylformylglycinamidine cyclo-ligase, chloroplastic/mitochondrial [Jatropha curcas]
16 Hb_024714_020 0.0894073818 - - WD-repeat protein, putative [Ricinus communis]
17 Hb_003384_030 0.089466732 - - PREDICTED: eukaryotic translation initiation factor 2 subunit beta-like [Jatropha curcas]
18 Hb_005701_040 0.0899433768 - - cellular nucleic acid binding protein, putative [Ricinus communis]
19 Hb_000684_420 0.0906876794 transcription factor TF Family: C3H zinc finger protein, putative [Ricinus communis]
20 Hb_001498_030 0.0907352098 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]

Gene co-expression network

sample Hb_004324_280 Hb_004324_280 Hb_000186_280 Hb_000186_280 Hb_004324_280--Hb_000186_280 Hb_001969_040 Hb_001969_040 Hb_004324_280--Hb_001969_040 Hb_002818_040 Hb_002818_040 Hb_004324_280--Hb_002818_040 Hb_000340_510 Hb_000340_510 Hb_004324_280--Hb_000340_510 Hb_000462_150 Hb_000462_150 Hb_004324_280--Hb_000462_150 Hb_001141_330 Hb_001141_330 Hb_004324_280--Hb_001141_330 Hb_000684_420 Hb_000684_420 Hb_000186_280--Hb_000684_420 Hb_000186_280--Hb_001969_040 Hb_002400_180 Hb_002400_180 Hb_000186_280--Hb_002400_180 Hb_000076_080 Hb_000076_080 Hb_000186_280--Hb_000076_080 Hb_000645_150 Hb_000645_150 Hb_000186_280--Hb_000645_150 Hb_012305_070 Hb_012305_070 Hb_000186_280--Hb_012305_070 Hb_001969_040--Hb_000462_150 Hb_003384_030 Hb_003384_030 Hb_001969_040--Hb_003384_030 Hb_018663_020 Hb_018663_020 Hb_001969_040--Hb_018663_020 Hb_001969_040--Hb_002818_040 Hb_002818_040--Hb_000340_510 Hb_002818_040--Hb_000462_150 Hb_002818_040--Hb_003384_030 Hb_000001_180 Hb_000001_180 Hb_002818_040--Hb_000001_180 Hb_005314_010 Hb_005314_010 Hb_002818_040--Hb_005314_010 Hb_005914_230 Hb_005914_230 Hb_002818_040--Hb_005914_230 Hb_000481_010 Hb_000481_010 Hb_000340_510--Hb_000481_010 Hb_000340_510--Hb_000001_180 Hb_000107_100 Hb_000107_100 Hb_000340_510--Hb_000107_100 Hb_002026_110 Hb_002026_110 Hb_000340_510--Hb_002026_110 Hb_017168_010 Hb_017168_010 Hb_000340_510--Hb_017168_010 Hb_000462_150--Hb_003384_030 Hb_000230_330 Hb_000230_330 Hb_000462_150--Hb_000230_330 Hb_001584_110 Hb_001584_110 Hb_000462_150--Hb_001584_110 Hb_000462_150--Hb_000001_180 Hb_001141_330--Hb_002026_110 Hb_000977_070 Hb_000977_070 Hb_001141_330--Hb_000977_070 Hb_005307_030 Hb_005307_030 Hb_001141_330--Hb_005307_030 Hb_000236_100 Hb_000236_100 Hb_001141_330--Hb_000236_100 Hb_001141_330--Hb_000340_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
130.154 50.2384 20.1193 24.1893 98.1919 118.784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
54.7061 58.7324 65.0924 21.0553 13.9196

CAGE analysis