Hb_004324_290

Information

Type transcription factor
Description TF Family: ERF
Location Contig4324: 182450-183559
Sequence    

Annotation

kegg
ID rcu:RCOM_1580750
description Ethylene-responsive transcription factor, putative
nr
ID XP_012090126.1
description PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
swissprot
ID Q9SUE3
description Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=1 SV=2
trembl
ID A0A067JQB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26011 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ethylene-responsive transcription factor crf4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_290 0.0 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor CRF4 [Jatropha curcas]
2 Hb_000574_120 0.0925710341 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000316_150 0.1053528939 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
4 Hb_004787_100 0.1239263762 - - PREDICTED: transcription factor bHLH47 [Jatropha curcas]
5 Hb_158123_010 0.1412529741 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
6 Hb_006483_050 0.1506400523 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA-like [Jatropha curcas]
7 Hb_002217_270 0.1576090579 - - PREDICTED: desiccation-related protein PCC13-62-like [Jatropha curcas]
8 Hb_005568_060 0.158072907 - - PREDICTED: mitogen-activated protein kinase 3 [Jatropha curcas]
9 Hb_003053_060 0.1595208123 - - PREDICTED: uncharacterized protein LOC105641515 [Jatropha curcas]
10 Hb_002835_260 0.1606579321 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
11 Hb_013057_030 0.1635446504 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000072_330 0.1667471943 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000434_050 0.1692937464 transcription factor TF Family: ERF ethylene-responsive transcription factor 5 [Hevea brasiliensis]
14 Hb_000103_400 0.1697204927 - - PREDICTED: ATP sulfurylase 1, chloroplastic [Jatropha curcas]
15 Hb_015978_030 0.1710993283 - - Zinc finger protein GIS2 [Medicago truncatula]
16 Hb_000975_330 0.1742195137 transcription factor TF Family: C2H2 PREDICTED: zinc finger protein ZAT12 [Jatropha curcas]
17 Hb_006538_030 0.1763510842 - - PREDICTED: uncharacterized protein LOC105642039 [Jatropha curcas]
18 Hb_000015_180 0.1791687723 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
19 Hb_000210_150 0.180395682 - - PREDICTED: protein YLS9-like [Jatropha curcas]
20 Hb_000532_030 0.1817111147 - - PREDICTED: oxalate--CoA ligase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004324_290 Hb_004324_290 Hb_000574_120 Hb_000574_120 Hb_004324_290--Hb_000574_120 Hb_000316_150 Hb_000316_150 Hb_004324_290--Hb_000316_150 Hb_004787_100 Hb_004787_100 Hb_004324_290--Hb_004787_100 Hb_158123_010 Hb_158123_010 Hb_004324_290--Hb_158123_010 Hb_006483_050 Hb_006483_050 Hb_004324_290--Hb_006483_050 Hb_002217_270 Hb_002217_270 Hb_004324_290--Hb_002217_270 Hb_000574_120--Hb_000316_150 Hb_000072_330 Hb_000072_330 Hb_000574_120--Hb_000072_330 Hb_000574_120--Hb_004787_100 Hb_013057_030 Hb_013057_030 Hb_000574_120--Hb_013057_030 Hb_005725_190 Hb_005725_190 Hb_000574_120--Hb_005725_190 Hb_000316_150--Hb_006483_050 Hb_000210_150 Hb_000210_150 Hb_000316_150--Hb_000210_150 Hb_000316_150--Hb_158123_010 Hb_005882_020 Hb_005882_020 Hb_000316_150--Hb_005882_020 Hb_005568_060 Hb_005568_060 Hb_004787_100--Hb_005568_060 Hb_004787_100--Hb_002217_270 Hb_000532_030 Hb_000532_030 Hb_004787_100--Hb_000532_030 Hb_000103_400 Hb_000103_400 Hb_004787_100--Hb_000103_400 Hb_006538_030 Hb_006538_030 Hb_004787_100--Hb_006538_030 Hb_158123_010--Hb_006483_050 Hb_002311_490 Hb_002311_490 Hb_158123_010--Hb_002311_490 Hb_158123_010--Hb_000210_150 Hb_011287_020 Hb_011287_020 Hb_158123_010--Hb_011287_020 Hb_035391_010 Hb_035391_010 Hb_158123_010--Hb_035391_010 Hb_000465_330 Hb_000465_330 Hb_158123_010--Hb_000465_330 Hb_006483_050--Hb_011287_020 Hb_000016_220 Hb_000016_220 Hb_006483_050--Hb_000016_220 Hb_001846_040 Hb_001846_040 Hb_006483_050--Hb_001846_040 Hb_000322_020 Hb_000322_020 Hb_006483_050--Hb_000322_020 Hb_136886_010 Hb_136886_010 Hb_002217_270--Hb_136886_010 Hb_002217_270--Hb_005568_060 Hb_000434_050 Hb_000434_050 Hb_002217_270--Hb_000434_050 Hb_000015_180 Hb_000015_180 Hb_002217_270--Hb_000015_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.759353 24.1555 3.09213 1.98129 0.114722 0.131182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.757691 1.15689 0.909189 0.731389 0.216662

CAGE analysis