Hb_004324_310

Information

Type -
Description -
Location Contig4324: 202367-207298
Sequence    

Annotation

kegg
ID rcu:RCOM_1581280
description hypothetical protein
nr
ID XP_002513600.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID P34109
description Myosin ID heavy chain OS=Dictyostelium discoideum GN=myoD PE=1 SV=2
trembl
ID B9RIN1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1581280 PE=4 SV=1
Gene Ontology
ID GO:0005886
description myosin ib heavy chain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42335: 202497-205750 , PASA_asmbl_42336: 205001-205341
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_310 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_011689_080 0.0579605931 - - PREDICTED: uncharacterized protein LOC105631867 [Jatropha curcas]
3 Hb_001195_690 0.0644280282 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
4 Hb_002078_150 0.0657392139 - - protein with unknown function [Ricinus communis]
5 Hb_002774_060 0.0672782061 - - PREDICTED: uncharacterized protein LOC105630599 isoform X2 [Jatropha curcas]
6 Hb_002105_090 0.0681341271 - - Rab4 [Hevea brasiliensis]
7 Hb_001377_290 0.0689146322 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
8 Hb_005539_350 0.0701682128 - - conserved hypothetical protein [Ricinus communis]
9 Hb_009773_020 0.0710818566 - - PREDICTED: molybdopterin synthase sulfur carrier subunit [Jatropha curcas]
10 Hb_000500_130 0.0723291766 - - small GTPase [Hevea brasiliensis]
11 Hb_003392_040 0.0732688872 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
12 Hb_000398_180 0.0732689283 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
13 Hb_125000_010 0.0736516323 - - PREDICTED: protein SCO1 homolog 2, mitochondrial [Jatropha curcas]
14 Hb_002030_040 0.0746586064 - - hypothetical protein JCGZ_18677 [Jatropha curcas]
15 Hb_000103_560 0.0758373983 - - ADP-ribosylation factor, putative [Ricinus communis]
16 Hb_001269_680 0.0761121227 - - PREDICTED: uncharacterized protein LOC105132670 isoform X2 [Populus euphratica]
17 Hb_001246_090 0.0776947465 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
18 Hb_003058_130 0.0779683526 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
19 Hb_000363_500 0.0797179044 - - PREDICTED: EH domain-containing protein 1 isoform X2 [Jatropha curcas]
20 Hb_003994_180 0.0801252936 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_310 Hb_004324_310 Hb_011689_080 Hb_011689_080 Hb_004324_310--Hb_011689_080 Hb_001195_690 Hb_001195_690 Hb_004324_310--Hb_001195_690 Hb_002078_150 Hb_002078_150 Hb_004324_310--Hb_002078_150 Hb_002774_060 Hb_002774_060 Hb_004324_310--Hb_002774_060 Hb_002105_090 Hb_002105_090 Hb_004324_310--Hb_002105_090 Hb_001377_290 Hb_001377_290 Hb_004324_310--Hb_001377_290 Hb_000398_180 Hb_000398_180 Hb_011689_080--Hb_000398_180 Hb_003058_130 Hb_003058_130 Hb_011689_080--Hb_003058_130 Hb_003392_040 Hb_003392_040 Hb_011689_080--Hb_003392_040 Hb_003001_120 Hb_003001_120 Hb_011689_080--Hb_003001_120 Hb_011689_080--Hb_001377_290 Hb_003052_100 Hb_003052_100 Hb_001195_690--Hb_003052_100 Hb_003994_180 Hb_003994_180 Hb_001195_690--Hb_003994_180 Hb_158092_070 Hb_158092_070 Hb_001195_690--Hb_158092_070 Hb_021254_030 Hb_021254_030 Hb_001195_690--Hb_021254_030 Hb_004657_020 Hb_004657_020 Hb_001195_690--Hb_004657_020 Hb_004128_190 Hb_004128_190 Hb_002078_150--Hb_004128_190 Hb_000103_560 Hb_000103_560 Hb_002078_150--Hb_000103_560 Hb_002078_150--Hb_000398_180 Hb_003847_080 Hb_003847_080 Hb_002078_150--Hb_003847_080 Hb_002078_150--Hb_001377_290 Hb_004545_060 Hb_004545_060 Hb_002078_150--Hb_004545_060 Hb_000045_090 Hb_000045_090 Hb_002774_060--Hb_000045_090 Hb_000329_030 Hb_000329_030 Hb_002774_060--Hb_000329_030 Hb_000656_040 Hb_000656_040 Hb_002774_060--Hb_000656_040 Hb_010172_080 Hb_010172_080 Hb_002774_060--Hb_010172_080 Hb_032208_090 Hb_032208_090 Hb_002774_060--Hb_032208_090 Hb_000494_020 Hb_000494_020 Hb_002105_090--Hb_000494_020 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_001184_090 Hb_001184_090 Hb_002105_090--Hb_001184_090 Hb_010407_040 Hb_010407_040 Hb_002105_090--Hb_010407_040 Hb_001377_290--Hb_000398_180 Hb_001377_290--Hb_003392_040 Hb_001138_050 Hb_001138_050 Hb_001377_290--Hb_001138_050 Hb_004195_160 Hb_004195_160 Hb_001377_290--Hb_004195_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
76.2802 30.226 32.5296 44.2161 67.8867 85.8153
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
105.833 85.9368 74.2222 27.5464 14.7508

CAGE analysis