Hb_004324_330

Information

Type -
Description -
Location Contig4324: 213708-219446
Sequence    

Annotation

kegg
ID rcu:RCOM_1581310
description protein dimerization, putative
nr
ID XP_012090130.1
description PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9RIN3
description Protein dimerization, putative OS=Ricinus communis GN=RCOM_1581310 PE=4 SV=1
Gene Ontology
ID GO:0003677
description hat transposon superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42338: 215378-219438
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004324_330 0.0 - - PREDICTED: uncharacterized protein LOC105648374 [Jatropha curcas]
2 Hb_007283_010 0.0695053365 - - PREDICTED: pre-mRNA-processing protein 40C isoform X1 [Jatropha curcas]
3 Hb_000175_410 0.0740394143 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform X2 [Jatropha curcas]
4 Hb_002233_130 0.0743045751 - - transporter, putative [Ricinus communis]
5 Hb_007305_020 0.0771104028 - - PREDICTED: protein SPA1-RELATED 2 [Jatropha curcas]
6 Hb_001244_150 0.0771134507 - - transformer serine/arginine-rich ribonucleoprotein [Populus trichocarpa]
7 Hb_000205_260 0.0827036547 transcription factor TF Family: SNF2 hypothetical protein JCGZ_23567 [Jatropha curcas]
8 Hb_000878_160 0.0829178909 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
9 Hb_026053_040 0.0829326183 - - conserved hypothetical protein [Ricinus communis]
10 Hb_007044_110 0.0862721798 - - nucleic acid binding protein, putative [Ricinus communis]
11 Hb_055235_020 0.0867846332 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
12 Hb_003747_120 0.087474407 - - PREDICTED: OTU domain-containing protein DDB_G0284757 isoform X1 [Jatropha curcas]
13 Hb_011972_020 0.087628364 - - protein binding protein, putative [Ricinus communis]
14 Hb_005523_020 0.0877270664 - - MORPHEUS MOLECULE family protein [Populus trichocarpa]
15 Hb_000086_150 0.0880432303 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 isoform X1 [Jatropha curcas]
16 Hb_002461_020 0.088503668 - - PREDICTED: uncharacterized protein LOC105642649 isoform X2 [Jatropha curcas]
17 Hb_013358_070 0.0888659741 - - protein with unknown function [Ricinus communis]
18 Hb_000457_230 0.0891098039 - - PREDICTED: ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic [Jatropha curcas]
19 Hb_000336_020 0.0894041803 - - PREDICTED: phospholipid-transporting ATPase 2 [Jatropha curcas]
20 Hb_003093_040 0.090224227 - - PREDICTED: nucleolar complex protein 4 homolog isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004324_330 Hb_004324_330 Hb_007283_010 Hb_007283_010 Hb_004324_330--Hb_007283_010 Hb_000175_410 Hb_000175_410 Hb_004324_330--Hb_000175_410 Hb_002233_130 Hb_002233_130 Hb_004324_330--Hb_002233_130 Hb_007305_020 Hb_007305_020 Hb_004324_330--Hb_007305_020 Hb_001244_150 Hb_001244_150 Hb_004324_330--Hb_001244_150 Hb_000205_260 Hb_000205_260 Hb_004324_330--Hb_000205_260 Hb_005288_070 Hb_005288_070 Hb_007283_010--Hb_005288_070 Hb_000457_230 Hb_000457_230 Hb_007283_010--Hb_000457_230 Hb_030414_040 Hb_030414_040 Hb_007283_010--Hb_030414_040 Hb_031284_010 Hb_031284_010 Hb_007283_010--Hb_031284_010 Hb_007283_010--Hb_000205_260 Hb_003186_020 Hb_003186_020 Hb_000175_410--Hb_003186_020 Hb_003093_040 Hb_003093_040 Hb_000175_410--Hb_003093_040 Hb_013358_070 Hb_013358_070 Hb_000175_410--Hb_013358_070 Hb_000175_410--Hb_031284_010 Hb_000011_270 Hb_000011_270 Hb_000175_410--Hb_000011_270 Hb_000523_080 Hb_000523_080 Hb_000175_410--Hb_000523_080 Hb_002233_130--Hb_001244_150 Hb_000260_560 Hb_000260_560 Hb_002233_130--Hb_000260_560 Hb_002233_130--Hb_007305_020 Hb_007035_040 Hb_007035_040 Hb_002233_130--Hb_007035_040 Hb_002328_040 Hb_002328_040 Hb_002233_130--Hb_002328_040 Hb_000086_150 Hb_000086_150 Hb_007305_020--Hb_000086_150 Hb_007305_020--Hb_000205_260 Hb_002571_030 Hb_002571_030 Hb_007305_020--Hb_002571_030 Hb_055235_020 Hb_055235_020 Hb_007305_020--Hb_055235_020 Hb_007044_110 Hb_007044_110 Hb_007305_020--Hb_007044_110 Hb_005523_020 Hb_005523_020 Hb_007305_020--Hb_005523_020 Hb_000573_060 Hb_000573_060 Hb_001244_150--Hb_000573_060 Hb_002641_130 Hb_002641_130 Hb_001244_150--Hb_002641_130 Hb_002350_010 Hb_002350_010 Hb_001244_150--Hb_002350_010 Hb_000608_300 Hb_000608_300 Hb_001244_150--Hb_000608_300 Hb_000205_260--Hb_005523_020 Hb_000205_260--Hb_007044_110 Hb_000205_260--Hb_000457_230 Hb_000205_260--Hb_005288_070 Hb_008059_010 Hb_008059_010 Hb_000205_260--Hb_008059_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.09957 3.04436 3.77015 2.24096 3.23073 2.35086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.954365 1.51893 0.842254 2.42317 4.29653

CAGE analysis